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Query: PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKELHNTKVTVRLRKSAYRNEWYLYIESYPVYTAGKSEPQRVREYLNRIVTTVVWDKTRTARTTSSSKSYKPKRDLNGVIQCKSEVDQEACIYADEVRKLRQREYDNADLYSDADTAQAEQKERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAPLast
1 -5.620[O] KOG4761 Proteasome formation inhibitor PI31  ali follow..  7  1....MAGLEVLFASAAPATCRQDALVCFLHWEVVTLGVGDQPGPNDKKSELLPAGWNNNKDLYVLRYEYKDGSRKLLVKAITVESSMILNVLEYGSQ--QVADLTLNLDDYIDAEHLGDFHRTYKNSEELRSRIVSGIITPIHEQWEKANVSSPHR................................. 156
2 -5.030[U] KOG3487 TRAPP 20 K subunit  ali follow..  6  76..VTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMN----FYEPNSPIRSSAFDRKVQFLGKK........................................................................................................................... 136
3 -4.960[NU] COG1677 Flagellar hook-basal body protein  ali follow..  16  21.........................................................................................................................AKTDNATGAGNTFTQMLDSMSDTQSNAQTSVSNNASDVLIQMKKAESEMKVIRDNVIESYKQLLN... 95
4 -4.900[O] KOG4413 26S proteasome regulatory complex, subunit PSMD5  ali follow..  3  443...................................................................................................................................EIINIVTDATTETAKIAMEARYNCCKAIHEAFLCSNFVDDPRRLKTGDKLQEAVRSGP 500
5 -4.790[P] COG0306 Phosphate/sulphate permeases  ali follow..  4  375........GIGLISSDLLGVLVAFAILVILSGYIYARSRRVP----VDPSNVNADWNEESNSVEPATPSAPAASEITEAPAAPAAQAVQDLNNENEVTK.......................................................................................... 461
6 -4.500[RT] KOG4070 Putative signal transduction protein p25  ali follow..  15  1....................................................................................................................MAASTDMAGLEESFRKFAI--HGDPKASGQEMNGKNWAKLCKDCKVADGKSVTGTDVDIVFSKNYEEFKK... 77
7 -4.420[L] COG0582 Integrase  ali follow..  8  1MSMAITDAWLRATNGKPYSGHRFGLGVRVSP-VYRANINGKMQRIKLGEY--------------------------------------AMKLRDAIQARESRAELVELG---FDPRKSTRSANDDSIITLNDLIDYWAENHARDNIKQCDALLKMFHTDITPTLG-NYPAKQLELIDFMPVFLKAKRR. 157
8 -4.410[S] COG1849 Uncharacterized protein conserved in archaea  ali follow..  9  1........................................................................................................................................MLEEELARKIERYFSIEEEALKKIRISPAEGSFLRKIAEDNMQMILSYYSDA. 52
9 -4.400[S] COG4066 Uncharacterized protein conserved in archaea  ali follow..  15  4.............................................................................SSDIPEKMTEMQLLEMLKKEASSVHIKDIMSASVYLREDARYLPPREQKERAFFNRIRDIKNDKNIYQGHVDTAGLKEFIDFLDQQLSQAKTENERCARIITIYVTFVRKEP 125
10 -4.330[Z] KOG3565 Cdc42-interacting protein CIP4  ali follow..  12  1MQKLASQLKRDWPGVKADDRNDYRSMYPVWKSFLEGTMQVAQSRMNICENYKNFISEPARTVRSLKEQQLKRCVDQLTKIQTELQETVKDLAKGKKKY------ETEQMAHAVREKADIEAKSKLSLFQSRISLQKASVKLKARRSECNSKATHARNDYLDRYYQTDLVMKALDGNVYDHLKDYLIA.. 195
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Rodrigues AP, Grant BJ, Godzik A, Friedberg I. The 2006 automated function prediction meeting. BMC Bioinformatics. 2007 May 22;8 Suppl 4:S1-4.