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Query: PB044822 Q89ZL7_BACTN/1-147 PB044822; Pfam-B_44822;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .
# Score Template Links and tools%idFirst MKLSQQSLSTIESAIQKAAGKYVCGCDQTAVTDIHLQPDQTSGQLTIYNDDDEELANVMIEEWATYDGDDFMENVKPNLKSTLCRMKDAGDFDKVTILKPYSFVLVDEDKETVAELLLIDDDTLLVDDELLKGLDKELDEFLKNLLELast
1 -7.390[E] COG0440 Acetolactate synthase, small (regulatory) subunit  ali follow..  13  1MSPKTHTLSVLVEDKPGVLAR---------VAALFSRRGFNIESLAVGATECKDRSRMTI---VVSAEDTPLEQITKQLNKLINVIKIVEQDDEHSVSRELALIKVQADAGSRSQVIDVSPESLTVE---ATGNRGKLEALLRVL.. 141
2 -5.760[R] KOG3037 Cell membrane glycoprotein  ali follow..  13  20...................................LRADPEKGYIVMNRDAYGLIH----FQWAKRNDLENPEDDIIVFSS-------ECTFEKVTECTTGRAYMLKYPSSAHSLFYWMQEASDDNDTSYAERINSYIKD....... 113
3 -5.480[K] COG5631 Predicted transcription regulator, contains HTH domain (MarR family)  ali follow..  13  51MSEVEYGLILASHAFSRWMVRCMAAAGLPGLSPIEILI------LHSIRHRDREKKLADICLALDIEDT-------HIATYAIRKLEKAGLLTTGKAAKEKTVKITAKGAEACAHYAQIRERLLVDSTANARPSEETLSELAALLRF 184
4 -5.200[S] COG4402 Uncharacterized protein conserved in bacteria  ali follow..  8  147................................TVEARFNVGEYDIVVLSAKE----SGGLETWLNRNGYKIPRGAKQLLKPYIRS-----AYKSSKFMLPIRLGMINATTEQDLIVYVLSPK......................... 254
5 -5.180[S] KOG3451 Uncharacterized conserved protein  ali follow..  15  4.............................VKKGVLVTSDPAFRQLLIHLDDSRQLGSKFIVRELDDTHLFIEKEIVPMLENKVEQIMENMNPE...................................................... 67
6 -5.150[R] COG3943 Virulence protein  ali follow..  9  2...........................................SIILYTANDGTAQFALQEFWLTQADAELYQTTKQNISKHIKTILAEQELEEKATVNFQLTVQNENGRKVNRKIAHYSLPMIIVGYRVRSARGIQFRQWATERLD 111
7 -5.070[Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit  ali follow..  11  68.............................................RVIDGMGAPLRDALVEIWQADAAGLYNSPNESRGWGRCPSNMETGEF-IFETIKPLWIVARGINLGLQTRMYFSDEEAANAEDPVLARIEHR.......... 182
8 -4.950[G] COG1070 Sugar (pentulose and hexulose) kinases  ali follow..  10  15.................................MALDAGTGSIRAVIFDLEGNQIAVGQAEGSMEFDLNKNWQLACECMRQALHNIAPEYIAAVSACSMREGIVLYNNEGTPIWACANVDARAAREVSELKELHNNTFENEVYRA.. 138
9 -4.940[G] KOG2517 Ribulose kinase and related carbohydrate kinases  ali follow..  12  1......................MAASKKAVLGPLVGAVDQSSTRFLVFNSRTAELLSHHQVEWVEQDPKEILHSVYECIAKTCEKLGQLNIGISNIKAIGVSVVWDKITGEPLYNAVVWLELR---TQSTVESLSKRIPGNNNFVKS 139
10 -4.890[K] KOG3391 Transcriptional co-repressor component  ali follow..  10  4.....GSRVTREEIKTEPENPINREKTCLLLLRIFTTNNGHHHRTDEFSRGNVQSRELQIYAWMDATLKELTSLVKEVYPEARKK-VKRPGYRVKEVGSTKSGRKGTDDSMTLPSQKFQVD.......................... 130
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;