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Query: PB045072 _Gut.Meta.Jp.0111663_ gi|163310555|dbj|BABD01000145.1||3 (+ 1662:2028~0 complete), from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .
# Score Template Links and tools%idFirst MRKLGFTLVAALAFSVSAFANNANDTINVAGKWDGTINKAKLTKYLQLSSQQNEQVASICDYFQEQMKVANSSKKNSDQKVRNAVYGNLKLMKNTLTEKQYSDYLRLMALTLRNKGIDLast
1 -20.900[UNTP] COG3678 P pilus assembly/Cpx signaling pathway, periplasmic inhibitor/zinc-resistance associated protein  ali follow..  13  1MRKVTTLVMASMFVLGSSAAEGYHGDGKMMMNKKGDRGHHNMFDGINLTEQQRQQMRDLMRQSHQSQPRLDLEDREAQIERHVEMAKVRNQMYNLLTPEQKEALNKKHQERIEKLQ.. 150
2 -10.500[S] COG5612 Predicted integral membrane protein  ali follow..  10  60RQPDPALAAAPVRQAVERAARPVAPQAQTPGSVDRPARPPLWTAGEALSPENRRGLRQALRAANQKNMPITQRARAERRAALAALASPGATFAATLSPQERAALAQGLSEVYAPKQ.. 203
3 -8.620[S] KOG2357 Uncharacterized conserved protein  ali follow..  9  395...........................................GRYKLSSQARNKTDGARQKAAQEAYKELENVRQEALQRKKAEKKKILEEA--LSSEALRKKEAKERARQMKKSMP 470
4 -8.550[MP] COG3015 Uncharacterized lipoprotein NlpE involved in copper resistance  ali follow..  12  2VKKAIVTAMAVISLFTLMGCNNRAEVDTLSPAQAAELKPEGIETSLFLEKDGTWVMNERYLGAREE.................................................... 81
5 -8.420[M] COG3047 Outer membrane protein W  ali follow..  19  1MKKITLALLAVASLVPTAASAHEAGD............................................................................................ 26
6 -8.190[S] COG4907 Predicted membrane protein  ali follow..  18  1MKKNILRIFLFLIISIISFSA--------------SFSISDLDVEAKLQKDGSMLVSE............................................................ 44
7 -8.120[S] COG3014 Uncharacterized protein conserved in bacteria  ali follow..  9  1MKILMSVILGISLTGCIGYRMDLEHFNTLYYEESPKKAYEYSKQFTKKKKNQNGLSALYARDYKTSLGVL-DQAEQRFDKTQSAFTRGAGYVGATMINDNVRAYG............. 113
8 -7.910[R] COG5633 Predicted periplasmic lipoprotein  ali follow..  15  1MRKGCFGLVSLALLLLVGCRSHPEIP--VNDEQSLVMESSLLAAGISAEKPVLST............................................................... 53
9 -7.590[M] COG4571 Outer membrane protease  ali follow..  15  1MKKSSIVATIITILSGSANAASSQLIPNISPDSSTGMLSGKSHEMLY-DAETGRKISQL........................................................... 63
10 -7.440[S] COG3863 Uncharacterized distant relative of cell wall-associated hydrolases  ali follow..  7  3LKKRVSMFLVALTMCGGLFVTPAKAVKTTNYAEEIAALQPGTTPE-EIMKSASQIAKQQHVKQDVILKQFYKEITADKAEGDRLAKESGMS........................... 92
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.