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current user: public |
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Query: PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;, from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . 190 . 200 . 210 . 220 . 230 | |||||||
# | Score | Template | Links and tools | %id | First | MKSRIISLGLVASLVCLLPQVAEAQIAASNPLEWTALAEGNELINGQIEKQIKGQTQTALLQNSIATEFNQIHKWEKQYNSYLKTASGYASSLKACTHLYNDGVRIFLTLGKLGKAIQNNPQGIVASMNMNNLYIETATELVSVFTLLNDAVAKGSNENMLTGAERSKTLWALNDQLSDFSRKLHLLYLSIRYYTFNDVWNNVTAGMLDRDNGEAARMALSHWHRAAALV | Last |
1 | -10.500 | [U] COG5314 Conjugal transfer/entry exclusion protein | ali follow.. | 12 | 2 | MRRRFLSGLITLSLIAKPYVQPAYALIVFDPSNYAQVLTAARSLEQINNQIQSLQNQATVLQNMARNLQGLDFSSVGQLTGSLQRIDGLMDQASGLSFDLNKLQDQWRNQSAARDRWQSAMQAFRQTMGVQSQIVENVRGDGDLLADLVNRSQGAGALQASQATNQ--LLALSTKQQMQIQTLL.............................................. | 203 |
2 | -9.180 | [R] COG4915 5-bromo-4-chloroindolyl phosphate hydrolysis protein | ali follow.. | 12 | 1 | MTVFKKILAFTGSILLVIILGGILTSLIHSGLVIATIVIAVAAILFFFSSKAGDRAQMIA-TGLTKKEYKYIRTNLEEARVKIIRLQKIMTQNKA-LYSFQERNKTLLLTKRIYGIVKEEPKRFYEAEDFFFSHLDSLVELTEKYAFLEK--------QPVKDKKIYQTLSDTRTLLNDLSRVIEKDLFTLLNQDVNNL----------DFELEVAKNSISK........ | 202 |
3 | -9.160 | [S] COG3184 Uncharacterized protein conserved in bacteria | ali follow.. | 11 | 1 | MNIKLKTLLLPFATLALCTNAFAAPPSDASLARWLDTQNFDRDIEKNMIEGFNAGFKPYADKALAEMPEAKKDQAAEAFNRYRENVLKDLITPEVKQAVRNTLLKNARTQEEIDGMIAGSPVGQSVVAKNPRLIKKSMSEIAVSWTALSGKIAQHHLPEFTEELRRI............................................................... | 172 |
4 | -8.140 | [M] COG2825 Outer membrane protein | ali follow.. | 10 | 1 | MKKWLCAASLGLALAASASVQAADKIAIVNVSSIFQQLPAREAVAKQLENEFKGR------ATELQGMERDLQTKMQKLQRDGSTMKASDRTKLE-NEVMKQRETFSTKAQAFEQDNRR---------RQAEERNKILSRIQDAVKSVADVVIDANA--VAYADSSKDITADVLKQVK.................................................... | 165 |
5 | -6.730 | [NT] COG3143 Chemotaxis protein | ali follow.. | 7 | 52 | ........................................RDRLDYVVQMTAQAAERALNSVEASQPHQDAMEKEAKALTQRWDEWFDNPIELSDARELVTDTRQFLRDVPGHTSFTNAQLLDIMMAQDFQDLTGQVIKRMMDVIQEIERQLLM............................................................................ | 165 |
6 | -6.350 | [R] COG3700 Acid phosphatase (class B) | ali follow.. | 9 | 1 | ....MKKITLALSAVCLLFTLNHSANALVSSPSTLNPGTNVAKLAEQAPVHWVSVAQIENSLTG-RPPMAVGFDIDDTVLFSSPGFWRGKKTYEKMNNGWDEFSIPKEVARQLIDMHVRRGDSIYFVTGRSQTKTETVSKTLA-MNPVIFAGDKPEQNTKVQWLQEKNMRIFYGDSDNDITAARDCGIRGIRILR................................... | 212 |
7 | -6.300 | [YU] KOG4460 Nuclear pore complex, Nup88/rNup84 component | ali follow.. | 6 | 590 | ................................RVKLLCDQKKKQLEDLSYCREERKSLREMAERLADKYEEAKEKQEDIMNRMKKLLHSFHSELP--VLSDSERDMKKELQLIPDQLRH----------LGNAIKQVTMKKDYQQQKMEKVLSLPKPTIILSAYQRKCIQSILKEEIREMVKQINDIRNHVN...................................... | 740 |
8 | -6.250 | [U] KOG3691 Exocyst complex subunit Sec8 | ali follow.. | 7 | 19 | .............................DPSGLLISVIRTLSTSDDVEDRENEKGRLEEAYEKCDRDLDEL--IVQHYTELTTAIRTYQSITERITNSRNKIKQVKENLLSCKMLLHCKRDELRKLWIEGIEHKHVL----NLLDEIENIKQVPQKLECMASKHYLSATDMLVSAVESLEGPLLQV-------GLSDLRLELH-----SKKMNLHLVLIDELHR..... | 198 |
9 | -6.170 | [S] COG5345 Uncharacterized protein conserved in bacteria | ali follow.. | 7 | 214 | ...........................YFGLDPFGPKTPTPSYYRAAIRSFQAFNGELTACKAVFDTRADNLIQFIDRIAGDIGSTSAILRERTRADDRFWFAYGQLYGYYGVLSAAGSDFAQVIRERNLTNLWNDTLSQTRAALRIQPAIISNGEESGWLMPSHLATMVLRVRSNLVELRSVLDR............................................ | 385 |
10 | -6.050 | [R] COG1579 Zn-ribbon protein, possibly nucleic acid-binding | ali follow.. | 8 | 29 | ..............................QKELAKVQSLKSDIRRKVQEKELEMENLKTQIRDGENRIQEISEQINKLENQQAAVKKMDEFNALTQEMTTANKERRSLEHQLSDLMDKQAGGEDLIVSLKESLASTENSSSVIEKEIFESIKKINEEGKALLEQRTELKHATNPELLSIYERLLN............................................ | 184 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |