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Query: PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;, from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTKVFLIVSVACNVWFLLMLLSDRITETKFVRFLKGAAGLWRSLGTKSEKQDTLHSEASDEDADIIGKSRFRMAPTRTTAAISTQEAAISEKGIELSEEEATFDDGNTETASRPTQVPEDKLDETFTSISPEELEYGEDEPEDDEPGKGQASGSAFEDIDMAVRTIKKDSPSEAEMRHAGKVMTELDGTELYSRITERLTDEPMSERLAKAMAVFVDTVNTTVAQPKTKVFVVLDNIEEFEIRNNLast
1 -6.580[R] KOG1400 Predicted ATP-dependent protease PIL, contains LON domain  ali follow..  2.............................................DEEENSEINSVQARDEDVQLEDQQSQGLQDRQVDVIEQAWNNAMPDEPSPPAEDAFQDPLATDGEGGDALEAMVENVLQDDTASEGSHPSSDMSLESPGSEDDSDLESLPHWMIPQNRLRSAVDMMVSQARNRDGGIAALLSGDNFLQRVRSMVFSQERRRSRTS--EETSQEAAEQPVDPPPQQPPRPPIDIGFDTN.. 197
2 -6.440[R] KOG4264 Nucleo-cytoplasmic protein MLN51  ali follow..  12  59.........................................LHLRRVESGGAKSAEESECESEDGIEGDA-VLSDYESAEDSEGEEGEYSEEENSKVELKSEANDAVNSSTKEEKGEEKPDTKSTVTGERQSGDGQESTEPVENKVGKKGPKHLDDDEIPRKGLFFEHDLRGQTQEEEVRPKGRQRKEHDKFR------EDEQAPKSRQELIALY-----------------------GYDIRS. 246
3 -6.380[J] KOG0650 WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis  ali follow..  13  8...........................................KRRGKDSEPTNEVVASSEASENEEEEEDLLQAVKDPGEDSTDDEGIDQEYHSDSSEELQFESDEEGNYLGRKQSSSAEEDEESSDEEDNEEEESTDGEEVEDEEKDSKSKQTDDKPSGSGAASKKQDSDTSDEEDIRNTVGNIP----YDWDAKKIIKPPQGDQIDEFLRKIEDPDFWRTVKDPLTGQDVRLTDEDIAL... 229
4 -6.240[S] COG5373 Predicted membrane protein  ali follow..  1MLEAIALLAFVMALAAFLGGRRSAERLDREIESLKAEIARLAKEGMGEPGPDLATGRPSEAGVPSVAGTEATADGPWSRAREGAGTSHDESAAGRESGDGAIDGPVAPSAAAARAESLESRIGGFLVQYSIEA-----------SPAVRLTLAAIF--LGVAGEVIRRRDVPAIADRFRNAMIPGLTAAGAVTLFGVVYAAYGIYDFIGTGA................................. 222
5 -6.170[R] KOG2295 C2H2 Zn-finger protein  ali follow..  369.........................................RKRNSSDDDSSSSESSSSSDEEKLKEKYDVEDGLRAEQKTEAEKDRQEATKAKQGPQSPKLDEDEGNENTEPKGLDSKINTYEEIDNTLKSPEISSNPIKNTDNGDGSKVEEDGEKPSVGKDKVVETETIDLDKVKDGQPRALHRTSSIFLRNLAPSITRSEIEAVCNRF.................................. 538
6 -6.140[S] KOG1043 Ca2+-binding transmembrane protein LETM1/MRS7  ali follow..  543..........................................NSLDGAFAETKIAKRLRHKLNSMIEDVDSMVDKLEDEKRNIREMLIDPTVENSVDLKKEVRIQDVIDSLAKLKESKGEQADDGEQRERIEALLKTIDED---------SDGVDKQLVLEVIELLEKHTDVHVSAAQMASMIGTLKKEDEVAGLTEEIRKVQSGNYQMPILPTGPSSADAFNQPQGVYTASKQVPARSEQ.... 735
7 -6.030[S] KOG2422 Uncharacterized conserved protein  ali follow..  2....................................SGRLLKKVLQEHEDSKLQKHHEEEEEED----------------EEESGARSSINPFDLLNDGDEDPEEIDDETIAEKKNEDADHQSSVADHVQPVSKNKSKKKKKKKNKESGSNVPKAEMTLDETLEALGLNANSKQDKVQETKPNADSSKKASSRFVLEDSKYLNLENELRRTYGSKAMRSFESESGSQGGS............... 180
8 -5.800[R] KOG2997 F-box protein FBX9  ali follow..  12  3...........................................................................................EAEEDCHSDTVRADDDEENESPAETDLQAQLQM-FRAQWMFELAPGVSSSNLENRPCRAARGSLQKTSAD-----TKGKQEQAKEEKARELFLKAVEEEQNGALYEAIKFYRRAMQLVPDIEFKITYTRSPDGDGVGNSYIEDND......... 141
9 -5.780[S] KOG4463 Uncharacterized conserved protein  ali follow..  156.KFQMVIPMIGLAFWTMGMFYHLSLLPGTSWRLPIRFVKPALSPTHVFIRPPYSDMQNASTFNP---------ETLFALPTGLDAERTENENQVENPVSNADANDSPTRQNARATAIASSSNTAASFRNRQQISHPPLGRTSSSSVLPTGPASQLYDMLSGRSERPELGNIREEDINTVQTIM--TSRAQAIQALSQT---NDVQRAVELLLEQTAD............................ 371
10 -5.610[K] KOG3766 Polycomb group protein SCM/L(3)MBT (tumor-supressor in Drosophila and humans)  ali follow..  721.........................................EEDADAMDDDTASEETGSELRDDQTDTSSAEVPSARPRRAVTLRSGSEPVRRPPPERTRRGRGAPAASSAEEGEKCPPTKPEGTEDTKQEEEERLVLESNPLEWTVTDVVRFIKLTDCAPLAKIFQEQDID-------GQALLLLTLPTVQECMELKLGPAKLCHQIERVKVAFYAQYAN........................ 894

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 1 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I. and Godzik A Connecting the Protein Structure Universe by Using Sparse Recurring Fragments. Structure (Camb.) (2005) Aug;13(8):1213-24