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Query: PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete), from HGM_OVER

Results of FFAS03 search in COG1018
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTKLVAVIALIFCAFMAEASKVEGNGNIITKEISVDNYSEIELGGNIEYSGNNFWGNRSNKKFPVFKYTHGRSASLKITIDENLFPLLSIKSNNGRLAIRIQDGTRIKPTQYVIEGSSKTLKYLKTSGPMDFEAQNAFSEDQLEIKISGSSDVKFPHNVKLRLGEFSVSGSGDLVFADLDCKNLTSKVSGSGDITLKGKADEARYSVLast
1 -9.540[S] COG3595 Uncharacterized conserved protein  ali follow..  10  125................................................................GKVNILPGENAHVKVEYKAYIAEKTKLEVEDDVLEIEANGRISAD---IELYLPVKEYENIEITPHAELKVEK-ISSQKMNIN-LMNGNAEVL-EVNSDELKIN-NKNGEIKVIDGTNSDLELT-GVNGNIRITTAFESGDVS. 271
2 -7.230[ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain  ali follow..  8  1MKKLVLSLSLVLAFSSATAAFAAIPQNIRIGTDPTYAPFESKNSQGGFDIDLAKEL---------------CKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQEIAFTDKLYAAVVAKNSDIQPTVESLKGKRVGVLQGTTQETFGNEHWAPKGIEIVSYQGQDNIYSDLTAGRIDAAFQDE................ 184
3 -6.190[S] COG2013 Uncharacterized conserved protein  ali follow..  11  51.........................LGAMVAYKGQLSFKREGTLEGGLMKAFKRAVSQEMSPLAGVAYLADQGKEIQILRLAGESL----NVNGNDLLAFEDSVQYDITMQRRVAGMAAGGLFSVRVQGHGMVAVLSHGKPLTLRVTIAWSGNLQPQLVMDTSLRSIFGRGGGE---------SYQMVFQGDGFVVVQPY........ 229
4 -6.040[M] COG2982 Uncharacterized protein involved in outer membrane biogenesis  ali follow..  11  438...........................................................................HIILKNADLRLQPLKFGLAGGSIVSNIHLEGDKKPMQGRADIQARRLKDADIRGTGN-------SVAALLGNSNGNLKLLMN-DGLISRNLMEIVGNGVARPQIFAFDTENALINVTGTASF--ASEQLDLTI 609
5 -5.900[S] COG4907 Predicted membrane protein  ali follow..  9  1MKKNILRIFLFLIISIISFSASLQKDGSMLVSEAVTYDIDEIN-----GIYFDIDAKGYGGITSLQVFEDEGHYENNVISYREVDPVNYEVTENDGVYRIKLYSKNYNNVRTFKFVYTLPEA------------IKVYNDVAQLNRKMVGQD------QQGISTVKVTIELPVSNDYDNS---KVLVFGHGPLTGEVDKIENTVVYRL 194
6 -5.880[S] COG5294 Uncharacterized protein conserved in bacteria  ali follow..  15  1MKKIVILIISVLLLGGIIGGVYYFKNANKIGAD---ASYVKITKDPT-----KSNEISFNNNYTLPAYDENGKETEVTFSADKEL--------KGAYLKLYIKEDKGVTSFEEVPEKEVPA....................................................................................... 106
7 -5.760[P] COG4454 Uncharacterized copper-binding protein  ali follow..  9  1MTRLKLALLLTALATPAFAGGTHSGGDNVMAIGEPGDK----KVTQTIQVTMKETPDGKMMFTPAKFEFKKGKTVRFAVKNVGELDHEFILHDNPNAISLAPGESGEINDGMFEFACLKPGHYEAGMRGDLKVSAK........................................................................ 158
8 -5.760[O] KOG3591 Alpha crystallins  ali follow..  5  85.....................................................................VGKDGFQVCMDVSQFKPNELTVKVVDNTVVVEGKHEEREDGHGM-----------IQRHFVRKYTLPKGFDPNEVVSTVSSDGVLTLKAEQAKSERIVQIQQTGPAHLSVKAPAPEAGDGKAENGSGEKMETSK..... 213
9 -5.720[S] COG5375 Uncharacterized protein conserved in bacteria  ali follow..  11  49LKIILPLSAAIISLAFIAVSVIRTWAPEKVSLESARIEDGKIVMEKNADRALQDIANPNLMTLEKVLAAVPVNDSVAQVIAQEGIFDRSTNTLKTAPFDINLSNGIQAKFQSADVDLKAGKMSSVSIKTN-----DGSIVAQSIDIADNGKGQVRARIAASNIK............................................ 231
10 -5.550[NU] COG3539 P pilus assembly protein, pilin FimA  ali follow..  12  200.....................................................................TTTGTPVLVYYLSGTINSLGSCSVNAGE----------------TIEVDLGDVFAANFRVVGHKPLGARTAELAIPVRCNTGNA-------GLVNVNLSLTATTD-QAIKTSRPGVGVVVTDSQNNIISPAGGTLPLSI 318
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;