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Query: HGC00024 gi|162813637|dbj|BABA01031072.1|2.0 TMP01508;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKNIYNTLGMTKACLCALAVSLVTTGCSDLLDKEPPSAISDGSFWTGEGDAMLALTGCYRFQTGWSHDDFATPQGLLYLDFAGGNGTEKENFSTLMASSNTVATNSNLRWYWGNAYTQIAKYNTFLENITDCPMEESKKEQWSAEVKCLRAYFFLNLAFYYTDVPMPLKTLSVDEANSISQTPQTEVYSQVEKDLKTAIDLLPVHYLRGIWRLPGGGLast
1 -9.570IDP91435 DNA uptake lipoprotein [Vibrio vulnificus CMCP6] VV1_0485 [Vibrio vulnificus CMCP6]  ali follow..  15  1.........MKHHTLAGLLAVSVLFGCSS--SEQIVPDVPPAELYAQGGNWLTAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKNDDLALGLATISRFTRLNPTHEKMDWVLEPVKQAFDDFKKLLERYPNSPYAEDSQKRMLAEYDLATADYYLRLQKTYPDTIAARKSL-----KIQLEAYKQLGLQDAIARTEELIRLNP.............. 240
2 -7.640IDP95354 hypothetical protein [Vibrio cholerae] WP_000753349 [Vibrio cholerae]  ali follow..  12  1MKK-----------TLVILSLFLVNACTSNAASVPG-GVTMPSFYPVRVTQVYGVNNIHNFMTFVSDSDVEYIRNRFPDYDGFGLPHALGITSRNQIGTGTNHLPDTLYVYWTKFYVT------------KYDIPDNVKQLSATEVGY-ESCYRTRFV--FGLLPAKVWLSGCGETIYLTELAPDEI.............................. 188
3 -7.480IDP05313 putative lipoprotein [Bacillus anthracis str. Ames] BA_1061 [Bacillus anthracis str. Ames]  ali follow..  12  1.........MRKLLTVIGITFLILAGCS---NGDFEKEIDAGKTALTNKEYKNALSSFERALDEKKDDSGAIVLVEQTKIMMEAVKLKEEKKIEESIQ-KVENMKDGNATLIKQAKKERTALLAILEQKKKYSEQLTKSEELINKKNYAEAKETLNKL---------VLETKDNKNLEEYNKKAVGLVTKIGEEEKTAKSKATAKAQKTSAVTSQKV 198
4 -7.370IDP05580 putative lipoprotein [Bacillus anthracis str. Ames] BA_0936 [Bacillus anthracis str. Ames]  ali follow..  12  2LKKLG-------ILVLGSAVALSLVACGDSTKEASNEKKEEPKQEAKKENKENK................................................................................................................................................................... 48
5 -7.210IDP05592 putative lipoprotein [Bacillus anthracis str. Ames] BA_3194 [Bacillus anthracis str. Ames]  ali follow..  7  1MKILK-------FGIIGALSITLLIGCTSNSNETKASNKEASTAVKEKEIVYENVMFEQKEVRKLEISPVNSKSSNQVVNTEN-----------------------------KTIFTSMESAEKKTLLLDQEAKNYIHSKMKVTYQDNSIQEFFVWIESDSDIVIAKASDETHGEGYDLREDNSKKIIQFFEKEF...................... 160
6 -7.030IDP95372 set238a-007 [Vibrio cholerae]  ali follow..  12  17KELAIRASKENKMKLFFLLLVLLVGSCSTNAAYETEQPWTWRVGVTMPSFYPVNVTRVYNFMTFVSDSDISYIRQIFPDYDGFGLPHALGITSRSQIGVGTTQLPDTLYMYWTKFYVT------------KYEIPDNVKQLVATKTTY-DPCYRAEFI--FGLLPAKVWLDGCGETIYLTELAPDQI.............................. 218
7 -6.990IDP04392 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1500 [Clostridium perfringens ATCC 13124]  ali follow..  14  1MRVLK-------GVILAIIPAFLFMGCGE--SKNDVAKVSFEKLSEKEEQILNLTDN................................................................................................................................................................ 49
8 -6.880IDP04088 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2931 [Clostridium perfringens ATCC 13124]  ali follow..  6  1.........MKKGMILLILSSFLLVGCDSIKMDKLAANNNERVKTIANDLIGDIDLSLY-------------------------GTKDEQNPKIEQQEILVDGDEILGQYLIQALIQGPSQKGSLAPILPKINLSKEAIVNMSATKEQATLEGIIATITQIPSINKINILVDNQMVDSLG..................................... 163
9 -6.850IDP05674 hypothetical protein lmo0859 [Listeria monocytogenes EGD-e] lmo0859 [Listeria monocytogenes EGD-e]  ali follow..  9  1.......MKIRKIAIAALSVVVLLTACGGGNSKSDDNGKTKVTFWATQVKYWDEMAKAYEKENP-------------DVTIEVSQMKESPSSEATIQSAIASKTAPTMSENINRSFAAQLADSKAIVPLNDVKGLDDVVKERNMSETMDSWKFS----NQYV-LPVYSNPILFAWRLDTLKELGYDAPPKTYSEALEVGKKLKAKYPDK........ 193
10 -6.780IDP95337 hypothetical protein [Vibrio cholerae] AHX36902 [Vibrio cholerae]  ali follow..  10  1MKR-----------LFLILSIVLLSACSSNAASVPG-GVTMPSFYPVKITQIYGVNEIHNIIPRMSDSDIEYIRNRFPKYDGFGLPHALGITSRNQIGIGTNHLPDTLYVHWNKFYVT------------KYDIPDNVKQLSATEVSY-ESCYRTRFV--FGLLPAKVWLSDCGETIYLTELAPDQTPDRDSNGFKADTYKESSYIRNIQQRAKD.. 216
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Harder T, Kolodny R, Sitbon E, Li Z, Godzik A. Using an alignment of fragment strings for comparing protein structures. Bioinformatics. 2007 Jan 15;23(2):e219-24.