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Query: HGC00485 gi|163636056|dbj|BABG01000217.1|3.0 TMP00523;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIMNPNILNKNPLMFFDRAVNAQRSQLLTVMADAVSECRTAADQAAELNETGQVGLLRLAEVWSAIRAKEGMGGLILEGTEAKILSDVVAQFYAYLSGCMFNDPVGMAIYAELHYMMSSLMLGEWFELast
1 -6.340IDP06052 hypothetical protein jhp0557 [Helicobacter pylori J99] NP_223275 [Helicobacter pylori J99]  ali follow..  22  11.................QALQAKRKRLLTELAELEAEIKVSSERRSSFNVSLSPSLLAEIE---EIEYEEKMSKERRIHHNLLLSPSFMAKVDEYM............................... 86
2 -4.890IDP06405 gene: ORF57; ORF57 [Human herpesvirus 8] YP_001129410 [Human herpesvirus 8]  ali follow..  15  244.................KKIDHLHRQMLSFVTSRHNQAYWVSCRRETAAAGGLQTLGAFVETWAQTVVRHG-DIDIILDTAIFVCNAFVTRFRLLHLSCVFDKQSELALIKQVAYLV.......... 351
3 -4.850IDP92122 DNA-directed RNA polymerase alpha chain, putative [Toxoplasma gondii ME49] TGME49_049560 [Toxoplasma gondii ME49]  ali follow..  16  756..EEERIVNTSAIIRKEREEAWKDKQ----------RTYRDLAENEPLKQLGD-GLVRYPPDTKPMMEAPEW-----------VMEDPMGQ----------RKPIGFSEFND............... 835
4 -4.580IDP05428 hypothetical protein lmo0717 [Listeria monocytogenes EGD-e] lmo0717 [Listeria monocytogenes EGD-e]  ali follow..  10  119....................AATKYGVPEALIKRVIQVESNFNPNV-VSSAGATGLMQLMYGSNRTDPATNIDA------GTKQLASYIKKYDGDLKLALAAYNAGVPPFKETQNYLTKII...... 221
5 -4.550IDP92569 gene: TI; trypsin inhibitor [Toxoplasma gondii] AAG02569 [Toxoplasma gondii]  ali follow..  11  247...............................RWHMLELIEEMKKNSKLSVLRTEELAEKVSQFRCNLSGDSRELWAWEHMSFVSVARVSWK--IFVKCHMLITP---RLYIPLE............. 325
6 -4.350IDP01227 gene: ptsH-1; phosphocarrier protein HPr BA_4268 [Bacillus anthracis str. Ames]  ali follow..  16  1.......MEKIFKVTSDSGIHARPATLLVNTASKFGSDINLEYNGKNVNLKSIMGVMSLG................................................................... 53
7 -4.350IDP93901 type III secretion system effector protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007715 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  11  27....................AAIRWDVPEIILEAIIINESGGKPDANKNGSHDYGLMQINTINIDPLKSQGIIKNKQALMQPCTNIEAGAYLLSQKFKKHGYSWRAVGAY................. 119
8 -4.270IDP01131 gene: ptsH-2; phosphocarrier protein HPr BA_5381 [Bacillus anthracis str. Ames]  ali follow..  14  1......MVQKRVQVSLKNGLQARPAALFVQEANRFHADIFIEKDGKTVNAKSIMGIMSLA................................................................... 54
9 -4.260IDP05152 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_0420 [Bacillus anthracis str. Ames]  ali follow..  13  130....................NRGGDRLYPLRYKQETQKTVEGDLTADMKDATDVKKMMLLKALEKVQLPLSFKTTIGYGTGHERVYNISPSQLGYLYAYTPAV-KGKVTFGEVYLVLKG........ 229
10 -4.050IDP00066 gene: kdsB; 3-deoxy-manno-octulosonate cytidylyltransferase [Campylobacter jejuni subsp. jejuni NCTC 11168] NTL01CJ00766 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  13  31...............ARRVSSVDEVCIALDDEKVLSIAKEYGLNAVLTSKDHESGTDRINEACKKLALKDDEIIINVQADEPFIECENLLKFKEFAS.............................. 112
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.