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current user: public |
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| Query: HGC00552 gi|162599220|dbj|BAAV01006262.1|2.0 TMP00636;, from HGM_OVER |
| . 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . | |||||||
| # | Score | Template | Links and tools | %id | First | MRKFNYKRLIVMLVVVLAITCLMATTAFAAGTGDVAGAVESTWSTASTQIKSVVDNVVFPAIDLILAVFFFAKLGTAYFEYRKSGQFEWAAPAILFACLVFTLTAPMYLWSIIGI | Last |
| 1 | -9.600 | IDP05521 putative cell surface protein [Clostridium difficile 630] CD1858 [Peptoclostridium difficile 630] | ali follow.. | 21 | 1 | MKKMKNKKAAVLLIVGVVISLFAGSKIVFAQGGLFTTLVNPIEAVAQIKVEVEVNV........................................................... | 62 |
| 2 | -8.180 | IDP05175 hypothetical protein lmo1656 [Listeria monocytogenes EGD-e] lmo1656 [Listeria monocytogenes EGD-e] | ali follow.. | 17 | 3 | .RKMRLLKGLMAFIVGISIIATPIITVYAASNK-VNGATNGKYHSLNKGTVKLNVSA.......................................................... | 66 |
| 3 | -6.650 | IDP02678 hypothetical protein FTT1653 [Francisella tularensis subsp. tularensis SCHU S4] FTT1653 [Francisella tularensis subsp. tularensis SCHU S4] | ali follow.. | 12 | 1 | MKKLSKLLLRMLITILVTIIVAGCASINDSNTRYENGYYIAELNYNFNDVYQATINSI......................................................... | 58 |
| 4 | -6.400 | IDP06529 gene: acm; collagen-binding MSCRAMM Acm (Fms8) [Enterococcus faecium DO] AFK59905 [Enterococcus faecium DO] | ali follow.. | 18 | 1 | MKKC-RNIILSMLFIITNITSLIPVHVYADAGRDISSNVTSSFDEKKQNIQP-YLWINWPS-EGNIRGEGFQKEIPLMIENKNVGTLTVRKDSAQ---VVFN............. | 116 |
| 5 | -6.220 | IDP00754 gene: spa; immunoglobulin G binding protein A precursor SACOL0095 [Staphylococcus aureus subsp. aureus COL] | ali follow.. | 10 | 4 | KNIYSIRKLGVGIASVTLGTLLISGGVTPAANAAQHDEAQQNAFYQVLNMPNLNAD........................................................... | 59 |
| 6 | -5.840 | IDP00824 IgG-binding protein SBI SACOL2418 [Staphylococcus aureus subsp. aureus COL] | ali follow.. | 13 | 1 | MKNKYISKLLVGAATITLATMISNGEAKASENTQQTSTKHQTTQNNYVTDQQ............................................................... | 52 |
| 7 | -5.800 | IDP04565 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1805 [Clostridium perfringens ATCC 13124] | ali follow.. | 9 | 1 | MIK-KIVVAVGLAFSLSFLVGCGNKSLVEQGKAAIK---QGNYEEATAIFKAASEE........................................................... | 52 |
| 8 | -5.720 | IDP00820 iron compound ABC transporter, iron compound-binding protein SACOL2167 [Staphylococcus aureus subsp. aureus COL] | ali follow.. | 10 | 1 | MRGLKTFSILGLIVALLLVAACGNTDNSSKKESSTKDTISVKDENGTVKVPKDAKRIV-PNLEEISKLKPDLIIADSSRHKGINKELNKIAPTLSL................... | 143 |
| 9 | -5.650 | IDP05442 putative lipoprotein [Bacillus anthracis str. Ames] BA_0171 [Bacillus anthracis str. Ames] | ali follow.. | 21 | 1 | MSK---KLLSLFSAVIVAAFVI-------TGCGQSDTTNKEQKENAAKENKTEKTD........................................................... | 46 |
| 10 | -5.600 | IDP02790 hypothetical protein FTT1525c [Francisella tularensis subsp. tularensis SCHU S4] FTT1525c [Francisella tularensis subsp. tularensis SCHU S4] | ali follow.. | 24 | 246 | ....................................GNIVYVKNSETSKVKLVVIGLVLSVVIALIVVFLKVIFSRAITEYRNLKQ............................. | 295 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Rychlewski L, Zhang B, Godzik A. Functional insights from structural predictions: analysis of the Escherichia coli genome. Protein Sci. 1999 Mar;8(3):614-24. |