current user: public

If you have questions about the server, please let us know.

Query: HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170
# Score Template Links and tools%idFirst NQDSWQKWNAEYEFRYQLMHGLISLRAALGMDYCDSRAADYHHTHCNLYAVVNAQAAYKCMALTFNLRTHRPTLYGETLALGEDLHDIALTYFKKRFSLTLAMNNPFMDNYRIGCENWNRRAGNTSYQYVNETSRMLLVKVTYGMDFGRKRKTAAKRIQNEDTDTGILKGNKLast
1 -11.400IDP02013 gene: pgtE; outer membrane protease [Salmonella typhimurium LT2] STM2395 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  123DTSVNYANEYDLNVKGWLLGDNYKAGVTAGYQETRFSGIGYSQRFEMPYIGLAGDYRINDFECNVLFKYRKLTFREKTENSRYYGASIDAGYYTSNAKIFAEFA---GGTQIIDKTSGDTAYFGGDAAGIANNNYTVTAGLQYRF........................... 312
2 -10.600IDP95175 capsular polysaccharide synthesis protein CpsB [Klebsiella pneumoniae 700603] EMR18996 [Klebsiella pneumoniae 700603]  ali follow..  10  236...DSNEYYLLFGMKNR-LSGKTEINGNVAWLYKDFIHNPDSQGFNGLNWDITADWKQMKFNLHSSQRIKDPTDSGGYILVSNFGVGYEHHWLVDRFSTLVDYSYITEDYKHQSNKRKDQSNLLSLTFNYD--RPSINFKLKLQW------NTMHSNKDTDTFYIGPD.... 395
3 -10.300IDP91317 Outer membrane receptor protein [Vibrio vulnificus CMCP6] VV2_0843 [Vibrio vulnificus CMCP6]  ali follow..  16  538NLDEAKTYGVEVGTRWYATDS-LELFANLGLLKTEYKEVNGTSKE-NITGNLGGQYSFFGFELSANAAYTGDYYTAITTIDAYWVANAQLAYVFENGRATLFATNLFDSNKTTLYTSSNLNDQLTQQ-------RMIGASLQLNF........................... 685
4 -9.790IDP00221 putative membrane receptor protein YPO0164 [Yersinia pestis CO92]  ali follow..  13  530NI-NATIMGGEMGMEYA-LTPYWKADASLAYAWGENTRDNRPLPQ-PLEARLGLTFEAGDWSSSALWRLVNSQ-KDFSSSAGFGVLSANVAYKNKQVKLSSGIDNLLNKAYSEHLNLAGSGFGYSVNTPLNEPGRTLWAKLNLTF........................... 686
5 -9.710IDP02626 gene: chuA; TonB-dependent heme receptor [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1614 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  16  555NIDQTRRLGVELSLSQNFLDDDLIFRESLTYLDAKISKGVNDGMR-KIKATAGLEYAWKNFSNFIDLTYFSRAKDGGTIDEDYFLTDIGMKYNYKKLQILAGIRNLFDKRYY-------TYQDSINDQYLVGNGRNYYVEFKYAF........................... 709
6 -9.330IDP01479 TonB system receptor, putative VCA0064 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  17  559NIAGVKTYGAEMSVMHR-LDDRWSVENKLGYVDGKDGENQYVRTLTPLEGSVQLNYQRERWDAYSRLNWASAMSRVPTCTTGWVSWDIGLNYQNAQLSASFNVVNLLDREYTRYQDVAG--VTPSDTLYSTEPGRYFTVHAKYVF........................... 713
7 -8.960IDP00165 gene: acfA; accessory colonization factor AcfA VC0844 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  122............................................HQQLKTNIKVGVTHTQYEAYSGKYEELELLLNDDIEIRKALLETGLKKNRFGALFSLGLDYNLIPELSVG-------TELRYQFDKYNDVLSISLNSKYYF........................... 215
8 -8.700IDP91023 hypothetical protein y2980 [Yersinia pestis KIM 10] y2980 [Yersinia pestis KIM10+]  ali follow..  55..SDHDGDVLGLGLGFNLPVGPMTATVGAKGIYMSPEDGS---SGGAVAIGGGLSYPIKSFSVYGEGYFAPEELTSGMKSYSEANGGVRWNVF-RPLTVDVGYRYI---------------MEGKEGRRDNRLADGVYIGAGLNF........................... 180
9 -8.410IDP06071 gene: fecA_2; iron(III) dicitrate transport protein [Helicobacter pylori J99] NP_223461 [Helicobacter pylori J99]  ali follow..  12  609EPVNARSQGVELELYYTPIRG-LNFHAAYTFIDANITSHTMVTNPAPHQFILDASYTYAKTTIGLSSFFYSRAYSDVLNTVPFTEWNLQISTTNQSVNASLQINNIFNMKY------WFSGIGTSPNGKEAAPPRSITAYVSYNF........................... 792
10 -8.060IDP00563 gene: hmuR; hemin receptor precursor YPO0283 [Yersinia pestis CO92]  ali follow..  14  538NIDQAKIWGWDASMSYKT--ALFNWDLAYNRTRGKNQNTDEWLDTIN-TVTSIVDVPVANSGFSVTFANRSSRVSSSTPQAGYGVNDFYVSYK-KGMTTTMLLGNVFEK-------------EYYTPQGIPQDGRNVKFFVSYQW........................... 676

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 2 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster

Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Fragnostic: walking through protein structure space. Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W249-51.