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Query: HGC00921 gi|162841401|dbj|BABA01003308.1|3.0 TMP01242;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MPYRLLPNTDQARIRALKTAVVKGDMCDVYDLPVSLKTLGEARIFLSKFETAHSYYVHCYGEQSRNSKKHQANVKTARLYISHFIQVLNLAVIRMEIKESHKALYGLPVDNFSVPDLSSEASLAEWGQKIIEGERKRTSQGGIPIYNPTIAKVKVHYDIFMEGYEKQKSLQSLTNRSLEQLASMRVQADRLILDIWNQVEAKFQDVSPNEKRLEKCRDYGLIIIIGPEKNRIRRFFKICLSIHIPIFFWKSLQKITFRYGTCPCCRCDAYLYALast
1 -8.930IDP91702 gene: EZR; ezrin [Homo sapiens] NP_003370 [Homo sapiens]  ali follow..  11  1.....MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWYFGLHYVDNKGFPTWLKLDKKVSAQEVRKENPLQFKFRA---------------KFYPEDVAEELIQDITQKLFFLQVKEGILSDEIYCPPETAVLLGSYAVQAKFGDYNKEVHKSGYLSSERLIPQRVMDQHKLTRDQWEDRIQVWHAEHRGMLKDNAMLEKIAQDLEMYGINYFEIKNKKGTDLWLGVDLNIYEKGFPWSEIRNISFN............... 251
2 -6.870CPX_91702_91677 Complex of EZRI_HUMAN with M1_I34A1 [Undefined organism]  ali follow..  11  1.....MPKPINVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWYFGLHYVDNKGFPTWLKLDKKVSAQEVRKENPLQFKFRA---------------KFYPEDVAEELIQDITQKLFFLQVKEGILSDEIYCPPETAVLLGSYAVQAKFGDYNKEVHKSGYLSSERLIPQRVMDQHKLTRDQWEDRIQVWHAEHRGMLKDNAMLEKIAQDLEMYGINYFEIKNKKGTDLWLGVDLNIYEK-FPWSEIRNISFN............... 251
3 -6.640IDP90108 bifunctional zinc finger-like protein/E3 ubiquitin ligase [Monkeypox virus] MPXV_ZAI1979_005_013 [Monkeypox virus]  ali follow..  17  142.................................................................................................................................................................TPNNTTTISELDIIKILDKYEDMYRVSKEKECGI---YEVVYSKRLENDRY------FGL--------------LDSCNHIF--INIWHRTRRETGALDNCPICRTRFRKIT 233
4 -6.490IDP90176 gene: CPXV023 CDS; CPXV023 protein AAM13470.1 [Cowpox virus (Brighton Red)]  ali follow..  12  1MEFDP--KINISSIDHVTILQYIDEPNDIRLTVCIIQNINNITYYINITKINPHLANQFRTWKKRIAGRDYMTNLSRDTGIQQSKLTETIRNCQ-----KNRNIYGLYIHYNLVINVVIDWITDVIVQSILRGLVNWYIA--NNNYTPN------------TPNNTTTISELDIIKILDKYEEVYRVSKEKECGI---YEVVYSKRLENDRY------FGL--------------LDSCNHIF--INIWHRTRRETGASDNCPICRTRFRNIT 233
5 -6.170IDP01682 D-alanyl-D-alanine carboxypeptidase family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA5104 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  13  62..........................................................................................................LVNKDYPVKKDSIRSDIINVNHNSELVRGYVIFDRNLRLSKDVVKKFLNVVDAAGKDFKEQSKLYKEMGSDYALPAGYSEHNLGLSLDV-GSTQKKMEKAPEGKWIEENVWKHGFVLRYPKNKSHITGIQ------YEP---WH------IRY.............. 211
6 -5.780IDP91044 gene: vanY; vanY [Enterococcus faecalis] EFA0002 [Enterococcus faecalis]  ali follow..  14  70..........................................................................................................LINSKYPVRQESVKSDIVNLSKHDELINGYGLLDSNIYMSKEIAQKFSEMVNDAVKDFDEQSVLYQEMGAEYALPAGYSEHNSGLSLDV-GSSLTKMERAPEGKWIEENAWKYGFILRYPEDKTELTGIQ------YEP---WH------IRY.............. 219
7 -5.540IDP91977 D-alanyl-D-alanine carboxypeptidase [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007810 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  11  75..........................................................................................................LANKRYPLSKDYNPGENPTAKAELLKLIAAMQAEG-------PISDQYSGFRSYETQAKLYQDYVNQDGKEAADRYSARPGYSELAFDLIGTDGDLVTEEKAAQWLLDHAADYGFVVRYLKGKEKETGYM------AEE---WH------LRY.............. 210
8 -5.150IDP92675 ribonuclease E [Vibrio cholerae O395] YP_001217556 [Vibrio cholerae O395]  ali follow..  12  138...RRIEGDERTELKSALSSLELPQGMGL-RTAGVGKSAEELEWDLNVLLKHWSAIKQASDSNPAPFLIHQESNVIVRAIRDYL-DIGEILIDSNSIYERALEHIRL------RPDFVNRVKKYEGEVPLFSQREVRLPSGGSIVIDPTEALTSIDINRATKGGDIEETALNTNLEAADEIARLRDLGGLVVIDFIDEVENRLREAVRVDRQIGRISRFGLLEMSRQRLS-------------------PSLAEASHH--ICPRCKGTGVI.. 409
9 -5.030IDP91778 gene: vanXYc; D,D-dipeptidase/D,D-carboxypeptidase VanXYc [Enterococcus gallinarum] AF132548_1 [Enterococcus gallinarum]  ali follow..  14  21.........................................................................................................HLVLAPFSDHDVYLQPEVAKQWERLVRATGLEKDIRLVDGYRTEKEQRRLWEYSLKENGLAYTKQFVALPGCSEHQIGLAIDVGLKKQEDDDLICPHFRDSAAADLFMQQMMNYGFILRYPEDKQEITGIS------YEP---WH------FRY.............. 159
10 -5.010IDP92078 DNA primase, large subunit, putative [Toxoplasma gondii ME49] TGME49_097840 [Toxoplasma gondii ME49]  ali follow..  14  66..YQHLPHLSVQRLRVLNFLHEKFGAETSLSPAVLREMGARKPELKQLLEEAGLMLARPVGGAAPAPSPELTQAVAMRDAISHFA--LRLAFSTDKVRQEARLF--LRREGLDYDFVTRPQRPYPDAASLVARRRVYIHRFIAYVPFTDMDQV------LLGKFKSVLSECFSLLDSRQSTLQTNVFGDARIGELLMAIPTVYIGKDFRKDAVETAED-RLFGAYMRDHHQLWLFFKAGMKLEENLQFNRASYTLRHIYGPPLSCS....... 466
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.