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Query: HGC00991 gi|163600283|dbj|BABF01000984.1|3.0 TMP01348;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MQVDTKLINLKLWGYITMKKMIAYCGLDCEKCDAYIATINDNQELRKKTAKLWAELNNAPILPEHINCQGCRVDGIKTVFCDNMCGIRQCALEKGVATCGDCLDLERCPTVGEILENNPSALKNLKGLast
1 -26.000IDP05619 hypothetical protein CD0664B [Clostridium difficile 630] CD0664B [Peptoclostridium difficile 630]  ali follow..  21  2....................FESRCGVCCDSCTKK----------------------------EQVNCTGCPTMEKPFW--GGECKVKTCCESKELNHCGECDTFP-CDMLLNKGKDQGFDPMV... 74
2 -9.360IDP06074 hypothetical protein jhp1441 [Helicobacter pylori J99] NP_224159 [Helicobacter pylori J99]  ali follow..  25  20.....................................................................................KLQACQEEKQVASCLKCEKVLNCKIRNSYVD........... 50
3 -9.260IDP06013 LCCL-related multimodular protein CCp1C [Toxoplasma gondii] ACJ45039 [Toxoplasma gondii]  ali follow..  11 1430....HRRDECQRMFVKEPSFRQIACA-FCSECCNYNTSLLPRSEWAQKKCRRNDPLASLLASGMITRLSTCLKELGDAAAHCMACQKEAC------ELC--CISWSPAGSLDQIGADLQDATER... 1548
4 -8.980IDP02316 gene: nuoG; NADH dehydrogenase subunit G [Francisella tularensis subsp. tularensis SCHU S4] FTT0037 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  14  48...................SVAANCRM-CPACATPVMDGMKVKTRSEEALQMQKDVMEFLLINHPLDCPICDQGG--------ECELQDIAMGYGMTRCILCTR---CVRF................ 163
5 -8.770IDP00108 gene: fdhE; FdhE protein NT01SF4751 [Shigella flexneri 2a str. 2457T]  ali follow..  13  171..MANLIPGKARAEYGEQRQYCPVCGLHCNLC-------------------------ETEWHVVRVKCSNCEQSGKLHYWS-----LDDEQAAIKAESCDDCGTY...................... 261
6 -8.620IDP06171 gene: nuoG; NADH dehydrogenase subunit G [Helicobacter pylori J99] NP_223905 [Helicobacter pylori J99]  ali follow..  14  40...................SPTVACKM-CYSCNTKAKNNATILTNTPTLMDERKSIMQTYDVNHPLECGVCDKSG--------ECELQDMTHLTGVNLCIMCER---CVTT................ 152
7 -7.470IDP02592 glycolate oxidase, iron-sulfur subunit, putative [Bacillus anthracis str. `Ames Ancestor`] GBAA1308 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  14  6..KENIQKEFKERLSEDELLNCMRCGFCLPTCPTYIQSGYKESHSPRGRIALMKAVVDGLIEPDEDVEN----------------TLNVCL------GCRACEP--VCPSGVNYGHLLEEARDIINQ 106
8 -7.460IDP90102 TNF-alpha-receptor-like protein [Monkeypox virus] MPXV_ZAI1979_005_002 [Monkeypox virus]  ali follow..  13  23...............APHAPSNGKCNLCCLSCPPGTYASRLCDSKTNTQCTPCGSDTFTSHNNHLQACLSCNGRCDSNQVETRSCN-RICECSPGYSGCRTCISKTKCG.................. 134
9 -7.410IDP00546 gene: frdB; fumarate reductase iron-sulfur subunit YPO0359 [Yersinia pestis CO92]  ali follow..  15  128...PKDGPNKQTPAQMAKYHQFSGC-INCGLCYAACPQFGLNPEFIGPAAITLAHRYNLDNRDH--------GKKERMPQLNGKNGVWSC------TFVGYCSE--VCPKHVDPAAAIQQGKIDS.. 232
10 -7.300IDP00188 prepilin peptidase YPO0806 [Yersinia pestis CO92]  ali follow..  12  13....................IFGAMGSFLNVLPIMLANLSSRSESHGEEIKMRSHLRNINLFQPGSFCHHCNES-----PIKYNIPILGWIFLRG--ASRCCNKYLFIEVLAVIQ............ 111
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Dunbrack RL Jr, Dunker K, Godzik A. Protein structure prediction in biology and medicine. Pac Symp Biocomput. 2000;(12):93-4.