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Query: HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MMRRKNITWVWLLGAAFMVGCGKQVPENIIQPDRMENILYDYHLSISMGNNLSYSDNYQKEAYKNYVFEKHHITEAEFDSSMVWYTRHTEELASLYKKLGERFRSEKKHMQELLALRENKPAVSLPGDTVDVWYDRKLYWLTDVPLANKVTFEIPADSNFKAKDAFLWSADYIFLSEGERRATMGFNILFDNDSVVGRVKDITCSGVQTLYIKPDSAFAIKSVNGFIYYMDSDSSTNKPGLIINNITLTRYHEPVDTMTVAGKDSLAVERRVGTDSMVTEKKADSIQSVDIRKNVPVRMNPREMKENNAADHSHPDRPQRIKRRNLast
1 -12.400IDP05429 hypothetical protein lmo0791 [Listeria monocytogenes EGD-e] lmo0791 [Listeria monocytogenes EGD-e]  ali follow..  10  1MKKGLFSMVLVLAMVLVLSACGASRVE----PKKAGEITVNAVVYNKDTDKVKDVYGEDGSKFEKEFETSFKESISTFTASFSSDVNLDKQVDEFYDALRKQVNEKTSYTTKVTNDDKESPEIQFAIKGLDM................................................................................................................................................................................................. 129
2 -12.300IDP04565 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1805 [Clostridium perfringens ATCC 13124]  ali follow..  13  1MIKKIVVAVGLAFSLSFLVGCGNKS-KAAIKQGNYEEATAIFKAASEEDSKDKEEAESLYDLTYNYVISNKAYNEFKLDVALDSLKKVEENKNK--ELMKEDITSLKEEISKDKSVLDDFYSSMEKVNDL................................................................................................................................................................................................... 132
3 -11.800IDP05580 putative lipoprotein [Bacillus anthracis str. Ames] BA_0936 [Bacillus anthracis str. Ames]  ali follow..  18  1MLKKLGILVLGSAVALSLVACGDSTKEASNEKKEEPK................................................................................................................................................................................................................................................................................................ 37
4 -11.000IDP05313 putative lipoprotein [Bacillus anthracis str. Ames] BA_1061 [Bacillus anthracis str. Ames]  ali follow..  11  1.MRK--LLTVIGITFLILAGCSNGDFEKEIDAKEYKNALSSF---ERALDEKKDDSGAIVLVEQTKIMME--KEEKKIEESIQSF-EKVENMKDGNATLIKQAKKERTALLAILEQKKKYSEQLTKSEEL................................................................................................................................................................................................... 132
5 -10.700IDP05445 hypothetical protein lmo0821 [Listeria monocytogenes EGD-e] lmo0821 [Listeria monocytogenes EGD-e]  ali follow..  10  1.MKK-IIFTVVLSLVLVLAGCADVTNTVKVDKKGEATISFDIDISSVAGIFASSYSDEVEAKLKEAGFTVDKKSNTSYHIEKKV-----DKNETTKSDMKPEDFGVKITNSKSFFTQKIKVDADIDIEKIWKKEVADVPFPKEILSQVDYTFILDLPISSIGEN................................................................................................................................................................. 157
6 -10.600IDP04564 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1610 [Clostridium perfringens ATCC 13124]  ali follow..  11  1.MKKVSLIFIALSFALLFLGCGNNNEASRYSRDTMESFGVDFAIYKFSDENFNKK------------LDLYDTKNQDAIDIISNYKEIEPYVYTIGEKGYTKLNYANGNLIQSNDLNKFSNNDKAIFEDLN.................................................................................................................................................................................................. 124
7 -10.400IDP05592 putative lipoprotein [Bacillus anthracis str. Ames] BA_3194 [Bacillus anthracis str. Ames]  ali follow..  9  1.MKILKFGIIGALSITLLIGCTSNSNETQVVNTENIKTIFTS-MESAEKKTLLLDQEAKNYIHSKMKVTYQDNSIQEFETHGEGYDLREDNSKKIIQFFEKEF.............................................................................................................................................................................................................................. 160
8 -10.200IDP05460 putative lipoprotein [Bacillus anthracis str. Ames] BA_0985 [Bacillus anthracis str. Ames]  ali follow..  9  1.MKKIISICALTALSFTLIGCASTSATDKSPQAKQEHKQNAFQLNSANITDIEILQTTNNTTSKSQTDNKEMI--------------------QSIVSAVQKGTPKTITLDQKKRKSAHSTITVTYKDDAKVDNKEQITIAKDKKKDKVEGVTVNIKNTKMMKDFFKM............................................................................................................................................................. 153
9 -10.200IDP01904 gene: smpA; hypothetical protein STM2685 [Salmonella typhimurium LT2] STM2685 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  14  1.MRCKTLTAAAAVLLMLTAGCSTLERVNYLTPTDVAKVRVGMTQQQAYALGTPMMTDPFGTNTWFYVFRQQPGHENVTQQTLTLTFNSSGVLTNIDNK................................................................................................................................................................................................................................... 107
10 -10.100IDP06088 hypothetical protein jhp0340 [Helicobacter pylori J99] NP_223059 [Helicobacter pylori J99]  ali follow..  12  1.MKN---LSTLLVFLFFCLGCVSNFNEDTYTLDLVLEKKIQ-ASRKGEITQDNVPIITAIATHLNDVDSGTYYDHEYF---VEIFTQN-NDWIDDGYISYELFGTKPTGSEPLWVREITRDEFDGILETTNRWSRAFLIAFDKLDYLAVQEAKLELDAYSLGKIVFNFAYQV......................................................................................................................................................... 164
11 -9.810IDP05485 putative lipoprotein [Bacillus anthracis str. Ames] BA_3234 [Bacillus anthracis str. Ames]  ali follow..  10  3MKGRNVSVVFIAIVIFIIAGCSNMIGNEDVTDNKVKKILNDAHFENKKVQMSKNPKIEAKATLYQIWVIPNKDKIEIIAGNSQYVQLEGKNAATLFQIITGE............................................................................................................................................................................................................................... 137
12 -9.710IDP04392 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1500 [Clostridium perfringens ATCC 13124]  ali follow..  11  1.MRVLKGVILAIIPAFLFMGCGEFSKNDKVSFEKLSE---EEQILNLTDNKNISKNKGYRIDLNYEVYKEGKEVKNE........................................................................................................................................................................................................................................................ 83
13 -9.600IDP93894 lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005558 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  14  1.MKLTQ-KISLLLAASVLAGCATAPKEYYKSDASPEQQIAALKESIEKSRAQGLPVPPGLHAHLGMLYGNTG----HTDLAMTEFNTEKSAFPEFMDFLMSKDKGAFK......................................................................................................................................................................................................................... 118
14 -9.410IDP05508 putative lipoprotein [Bacillus anthracis str. Ames] BA_5398 [Bacillus anthracis str. Ames]  ali follow..  11  1.MTIRKRTSFIWIFLFSLVACSPPNTTGISNLDKFEQFVLNVEQVKVDKIRIVHYTHEGDPIFQTLERSKNDILYASDNRKDQFDGDNKGLYKDSCKSIVKDERESGTTY....................................................................................................................................................................................................................... 121
15 -9.390IDP05582 putative lipoprotein [Bacillus anthracis str. Ames] BA_1978 [Bacillus anthracis str. Ames]  ali follow..  9  1.MKYGKVAVVGALSVGLLTGCFGEKP-----EENLYTAFETAATQEKSLVDEAKKLEKEGQELYSQILQEGKDHNDAVMKKIEQATANVDDREKVLKNEKEMLEKAQKETKSVQGNIEKLEDKKLQKQAKAVEESYKNRYDAFQKMNENYTKALATEKEL..................................................................................................................................................................... 157
16 -9.380IDP05029 putative lipoprotein [Bacillus anthracis str. Ames] BA_0864 [Bacillus anthracis str. Ames]  ali follow..  16  1.MKKYTLYSLMLLTLLFLSACSNSAPETIFTSSKKNETINEDEMKRSIKTYLDYSGEYENTVPLSSAMSDEKVTESD-DANFHHFISNPHDYKQPSKEIHDYISSSTALSVELEQELDKLAEDGNLFKTDF.................................................................................................................................................................................................. 165
17 -9.290IDP05486 putative lipoprotein [Bacillus anthracis str. Ames] BA_4573 [Bacillus anthracis str. Ames]  ali follow..  12  1MRAFFRGIGPFLIVVLLLVGCQSEENKIEQKATTTK-------------AEEKVQITKEEEKSIQDVMDKFTTNEKNLAEHIELFSKKMPSAEDLKTQKEAAFQKGNKKIE...................................................................................................................................................................................................................... 100
18 -9.180IDP02672 hypothetical protein FTT1602 [Francisella tularensis subsp. tularensis SCHU S4] FTT1602 [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  13  1.MKKQLFAISITTALLVLSACGQTGPLYLPDEDKLNS................................................................................................................................................................................................................................................................................................ 36
19 -9.150IDP05267 hypothetical protein lmo0255 [Listeria monocytogenes EGD-e] lmo0255 [Listeria monocytogenes EGD-e]  ali follow..  9  1.MKKFLSILSILVLALLVTACGSDSSDKKSAKKEEKMETVTYIADINGAKLEATFSHVGDNLRKVDQKMVYPLTALGLESGANLDDATKKQLEEQVASQYSAYKESK--ASLETKFTDEALELTMSVDLYKADKDSVASLLGGTTDPKNVSLKETVKQFEAQG.................................................................................................................................................................. 161
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;