current user: public
If you have questions about the server, please let us know.

Query: PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450    .  460    .  470    .  480    .  490    .  500    .  510    .  520    .  530    .  540    .  550    .
# Score Template Links and tools%idFirst MTMQGDAQCVRGNRNTAWPLAARLFPAMFALLMLVIAGTGSAAAQPSPWTARPFGDRLVGWDTYRRLDLLPYLSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEDHGAGEVDSIWLTRDGGNLRAIGNIRVELDGQTVLDTPVQSLVDGQLGAPFVWPLVANAGESPGGDYIKVPMPYRRSMRISVESHLEYYHVDYRQFPTAEGVSTFSPADPAVDVLDRFRAAGTVDPKPAAPGEVHSNRVIELPGGAEQTIAESTGPASISALRLYLPAPADQSLTGLRLRIEFDGRTTVDSPLGEFFGAGLGPTPVRSLMFAAFPQPDGSMALWCWWPMPFARSARVSLANTGAGPVFGIAAEVTTTPDARWAGALASGRAGYFTARSHAGPTILGQDWPFADEQGRGKFVGVSQTIRGQRTRTAFSDNAPYFLEGAERVYTDGAASPQWYGTGTEDLYEGGWYFKDGTHFSDPLNGQPDQRTATAGCADYCVAVYRIMPAEAIGYHSALRFGIEHGKRNMVEPDYSSTAFLYTQPDAELTGTDDVNPTDPLLast
1 -7.430IDP95298 thioredoxin family protein [Peptoclostridium difficile] WP_021368768 [Peptoclostridium difficile]  ali follow..  7  1................MEIIKKIGGIILIVSGILMMVNGFGSISKHFNTSQNSKIESKQEENKRENSTDKEENSDGNDSQKDSNNDNNDKGSNDEDRIKSIDFTLTDQYGKTHKLSDYEGKVVFLNFWATWCPPCKEEMPYIEQLYKDYNKNNDDV--ILGVASPNLGREGSREHVVNFLKDQGYTFPVVLDEDGALAINAFPTTFIIDKEGYVTQYIPGAMDKATMASFIENQRNK.................................................................................................................................................................................................................................................................................................................................. 224
2 -7.180IDP01904 gene: smpA; hypothetical protein STM2685 [Salmonella typhimurium LT2] STM2685 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  10  1...................MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQ--------GNYLTPTDVAKVRVGMTQQQVAYA-------------------------GTPMMTDPFGTNTWFYVFRQQPGHENVTQQTLTLTFNSSGVLT...................................................................................................................................................................................................................................................................................................................................................................................................................... 102
3 -7.160IDP01348 haemolysin VCA0219 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  9  1...................MPKLNRCAIAIFTILSAISSPTLLANINEPSAADIISQVADSHAIKYYNAADWQAEDNALPSLAELRDL------------------VINQQKRVLVDFSQ--------------------------EGQAEMQAQFRKAYGVGFANQF------IVITEHKGELLFTPFDQAEEVDPQLLEAP-----RTARLLARSGFASPAPANSETNTLPHVAFYISVNRAISDEECTFNNSWLWKNEKGSRPFCKDANISLIYRVNLQYGIVGSATPDAKIVRISLDDDST---------GAGIHLNDQLGYRQFGASYTTLDAYFREWSTDAIAQDYRFVFNASNNKA----------------------------QILKTFPVDNINEKFERKEVSGFE--LGVTGGVEVSGDGPKAKLEARASYTQSRWLTYNTQDYRIERNAKNAQAVSFTW......................................................................................... 367
4 -7.070IDP05695 hypothetical protein lmo2080 [Listeria monocytogenes EGD-e] lmo2080 [Listeria monocytogenes EGD-e]  ali follow..  7  1...................MMTGFKKVILPVLLVVLFLAGCNQAEVPALVLDGTITDTSLLENNNEL---------TVNGTLTWNGEKNDYASEVMITVSSNTAVTNATTGKAMKLADIKEEDTVRAVSNITSPAPGKVSENATSLKVTPK........................................................................................................................................................................................................................................................................................................................................................................................................................ 127
5 -7.020IDP95297 hypothetical protein SPy_1558 [Streptococcus pyogenes M1 GAS] NP_269625 [Streptococcus pyogenes M1 GAS]  ali follow..  9  1...................MKKGLLVTTGLACLGLLTACSTQDNMAKKEITQDKMSMAAKKKD----------KMSTSKDKSMMADKSSDKKMTNDGPMAPDFELKGIDGKTYRLSEFKGKKVYLKFWASWCSICLSTLADTEDLAK---MSDKDYVVLTVVSPGHQGEKSEADFKKWFQGTDYKDLPVLLDPDGKLLVRSYPTEVFIGSDGVLAKKHIGYAKKSDIKKTLKGIH.................................................................................................................................................................................................................................................................................................................................... 207
6 -6.970IDP91959 thioredoxin family protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100000757 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  10  1...................MKKWQTCVLGAGSLLCLTACSGKSVTSEHQTKDEMKTEQTASKT--------SAAKGKEVADFELMGVDG---------------------KTYRLSDYKGKKVYLKFWASWCSICLASLPDTDEIAK---EAGDDYVVLTVVSPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVRSYPTQAFIDKEGKLVKTHPGFMEKDAILQTLKE.................................................................................................................................................................................................................................................................................................................................. 186
7 -6.940IDP02737 putative lipoprotein [Bacillus anthracis str. `Ames Ancestor`] GBAA1974 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  7  1...................MQKWI---GIMGIIFILTGCKMSEAPTNLMEAPANEKWINELKEQID-YRLLTPMSNKDKQMIWSMD----KQDNKKEAVIFYKLPNADHSVYLAVYEKNGNGWKTKSTHKFNGGDVDIVEVGDFTGNGKREL------LIGISVDRESLKHVMYVFSEENEDMREIYNRNYTKLFIDDLNKNGLKDLSLVTYEKDEKLIVEFIEQFKTLSEASFDNSIQRIQMGRISKSLKAIVIDAGVGAHSGITYVAKFDENHYEVLPIDGKEDLFNEYVVESKDVNEDGIIEFVRTVDSPLFERYIQWSESGIKPIEERYIDIEKGYYVKIPKELIGKITISDEQKESNSQK.................................................................................................................................................................................................. 353
8 -6.750IDP02290 ahpC/TSA family protein [Bacillus anthracis str. `Ames Ancestor`] GBAA3674 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  7  1.......................MWRKLTIIVVLLCLAGYAAYEQFGKSDQAAQGEQEKSEAAMKEMIASNGIEIGKSAPDFELTKLDG---------------------TNIKLSDLKGKKVILNFWATWCGPCQQEMPDMEAFYKKHKD------EILAINYTPSEKGGGVEKVSNFAKEKGITFPILLDKNIDVTVITIPTSYFIDTKGVIQDKFIGPMTQKEMEKRIAKLK.................................................................................................................................................................................................................................................................................................................................... 191
9 -6.410IDP05417 conserved domain protein [Bacillus anthracis str. Ames] BA_4788 [Bacillus anthracis str. Ames]  ali follow..  10  1...................MFKQFKMIIAVFAVLFTFIATLGLQDAKAAT---------------------KLADGKYNIAFTVWKGDKDESSRMNRYFESPATLTVKNGKQYVSFKVKDSTSIKSFQVEKDGQFVETTVLSENKKDNTRVVEFEVADL................................................................................................................................................................................................................................................................................................................................................................................................................ 119
10 -6.250IDP95300 gene: tlpA; thiol:disulfide interchange protein TlpA [Clostridium tetani E88] NP_780861 [Clostridium tetani E88]  ali follow..  9  1................MINLKKKVTIFLILILIILSSVFYKFYVDKNQKDIDNKSNTTTQTEISED------KPKRIASLDFKLKDLND---------------------KEITLSEFKGKKVMLNFWATWCGYCVQEMPYMQNIHNDIVILAVNVGE-FMEKKSYDFPVVLDERQEVAQNYGVQAFPTTL................................................................................................................................................................................................................................................................................................................................................................................ 159
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;