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Query: PB002794 gi|86143885|ref|ZP_01062253.1| hypothetical protein MED217_03525 [Flavobacterium sp. MED217]gi|85829592|gb|EAQ48055.1| hypothetical protein MED217_03525 [Leeuwenhoekiella blandensis MED217], from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNTETLTYLLEHPDKITSEETTQLRTVVEEFPFFQAARALHLKGLKNEDSFLYNTYLKKTAAHTQDRTVLFDFITSEIFNQTAISAQIKAQEDHLRNMPVHEFVDVSSEMEAEELQKANRVLDPEFFVRKEASEETQPEEQLQLGKPLDFNKAETHSFSEWLKLTAFNKIDRSKEVKETISASASDKTEASSENTIIEETASETPLELETTIPSIEVDQDPERARRLELIDKFIESNPKIKVSTPDSNFKKPNLEDRFQPSDSLMTETLARVYVEQKNFSKAKQAYRILSLKYPEKSGFFADQIRAIEKLQENLast
1 -12.500IDP93894 lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005558 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  38.......................................................................................................................................................................................................................................EYYKSDASPEQQIAALKESIEKSRAQGLPVPPGLHAHLGMLYGNTGHTDLAMTEFNTEKSAFPESTPFMDFLMSKDKGAFK. 118
2 -10.600IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  1........MINRDNKKAITKKGMISNRLNKF------------------------SIRKTASILVGTTLIFGLGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDSNTD.......................................... 243
3 -10.600IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  1........MINRDNKKAITKKGMISNRLNKF------------------------SIRKTASILVGTTLIFGLGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNPKEPVNVSKEELKNNPEKLKELVRNDS............................................. 240
4 -9.290IDP90425 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_547 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  16  233...............................................................................................................................................................................................................................QDARMNAAALRKQHPNHPSNTEVENYIHHMCEAYASC-------STGRFYEKKRKASSAKIYYSIALENFPDTS--YVARLERLSKQM.. 317
5 -9.030IDP04095 hypothetical protein [Yersinia pestis CO92] YPO1987 [Yersinia pestis CO92]  ali follow..  15  220...........................................................................................................................................................................................................................................................................NLINLYSFAGNKQQALILSEQLLRAAGDKGTYYDLALSGIMAFYHA 265
6 -8.280IDP06057 hypothetical protein jhp0260 [Helicobacter pylori J99] NP_222981 [Helicobacter pylori J99]  ali follow..  14  376................................................................................................................................................................................................................................................................ALDSNSVLYLDSLAWGYYKLGNCLEAKKIFSSIAKELIQNEPELKEHNKIIQECKK. 431
7 -7.970IDP91388 TPR repeat-containing protein [Vibrio vulnificus CMCP6] VV1_1438 [Vibrio vulnificus CMCP6]  ali follow..  1....................MESILSEINK----------ALAELASQKSQPAQLQRAELPKVTSVKPIVWIAT-TQSAPVSQNYSEPVTTTVVTVAEETLRSPTQKTPSEGAQSVTVSQPNIVTTARVEKATSVAPSSVKPATAPSKSETTLVAKAAVKPSATENQLVSHSVPSQVKAQAPAAQNTPAVENSMLVEQVELTQEQLAEKAIGRAEKALDANNLQNALSAYSDALRHTPKMLIKANQNEAALTPLVALYDDSGKEYLAMRAALAQKIKKDDIALESYQRLSQMDSENQRFIKDRLALLQNLES. 375
8 -7.780IDP93884 secretion system chaperone SscB [Yersinia enterocolitica subsp. palearctica Y11] YP_006007028 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  10  1.....................................................................................................................................................................................................................................MDKMLAILAQVNKTLENISNPQDRPQCERVSQQEIQA-EQGYQAWLADNYITAVEDFSWLTLHRPLEPHFHAGALQMQQEFIL. 87
9 -7.550IDP90405 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_651 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  12  450.....................................................................................................................................................................................................QEEACLRLLKEILVFSQNEKACLNRTLRLVKHFYTQALAMRNFTHLVWIENFLDEVGLPKTLASDAEIANCLAQYLFAKGDYRLCIVYSSWLARAAPSTEALYTEALEVFQRLPLG 579
10 -7.470IDP06329 58 kDa phosphoprotein, putative [Toxoplasma gondii VEG] EEE34668 [Toxoplasma gondii VEG]  ali follow..  15  70....................................................................................................................................................................................................................DDSSLESEVEEFDEESLKDSEVIPPETSPLPPLAPEGEKELTDDELDKLGKLKEE--ASAACEAGNSERALEKYTEALLIGNPTALLYTRRIRDCDEALK. 180

FFAS is supported by the NIH grant R01-GM087218-01
1 3 7 8 0 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Sasin JM, Godzik A, Bujnicki JM. SURF'S UP! - protein classification by surface comparisons. J Biosci. 2007 Jan;32(1):97-100.