current user: public
If you have questions about the server, please let us know.

Query: PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis], from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240
# Score Template Links and tools%idFirst MTKAFLIVSVACNVWFLFLLFYDRIMDTKLIRFFRHIAGLWRSLDSTVAEQGKDKEIPHADTSDIIGKSRFKMASTRTTAAIPTQEAATSEKGIELSEEEATFDDGNTETVSRPTQVPEDKLDETFTSIPPSELEYGEDKPEDEEPDKKQASGSSFEDIDMAVHTIWKESPSDEEMRHAGKVMTELDGTELFTRITERLTDEAMSERLAKAMAVFVDTVNMTVTQQKEKVFVIPDNIEEFDFRLast
1 -7.900IDP91949 pneumococcal histidine triad protein E [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007099 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  11  877.........................................AESYGMKLENVLFNMDGTIELYLPSGEVIKKNMADFTGEAPQGNGENKPSENGKVSTGTVENQPTENKPADSLPEAPNEKPVKPENSTDNGMLNPEGNVGSDPMLDPALEEAPAVDPVQE-----KLEKFTASYGLGLDSVIFNMDGTI-----LRLPSGEVIKKNLSDLI............................... 1038
2 -7.340IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  8 1847.........................................QRLQKMVSGVKAAYRRLEEENTRLAATRRRDDKLQRQVEAERERAVELLKEATRRAKEEKDLIARQPPPARDWSDTVVLSTPQIFVNSQAACAPFADSGRDEGGRDEWYEVSDA-AESSNESRTTAGAKLRQQQLDLAGRT............................................................. 1990
3 -7.160IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  10  1MKKALLISLIM-------------ILSMVVSTIYPTVSYASELGENSQIQSGSTNSSTGEEKESDNKKPEQTPEKDKATDNKKPEQTPEEEKPTDNKKPEQTPEEDKSTDNKKPEQTPEGEKPI--DNKKPEQIPEEDKSTDNKKSEQALEDEKPLDNKNTEKTPEEDNLLEDENLLKVLEEELNEENEDYGFVVKINNNTIETESMKKISFNLTYTPTSKGIQAGDSITFKVPDVFNKVN.. 230
4 -7.110IDP06012 membrane-attack complex / perforin domain-containing protein [Toxoplasma gondii ME49] EEB00555 [Toxoplasma gondii ME49]  ali follow..  5  34............................................LQSTVERIESPEALNEVPTKVERNEFTEKGDKTEQVLTAQADHKSLLEGRSVRLESTSTAPDDDFDFLFEDDTPKKPKSRVNKGTSSDETSPGDRSSGEGSSDSDSLLSVVHRTKGNATQANKNQTRITHPKSKAQHQKKVTKKQGIPGSDSLGTSSADFDFDIDSSSNTQADDSQRQSLGDSSALDLFGSDTGD.... 228
5 -6.100IDP06510 WxL domain surface protein [Enterococcus faecium DO] AFK58238 [Enterococcus faecium DO]  ali follow..  11  6..............................................................KKLIASILFVF-ADVEKTNESTQSENQSFDKTTFSEESITSETTESQSEASTNKRQEENKTSETSEVAEQTSDSSEAALARAVSADGYSEAATTEELAQLLA-LIQPLTLDRELEIKRDIVIDFGGFAH.................................................... 149
6 -6.070IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  9  3..........................................NRDNKKAITKKGMISNRLNKFSIVGTASILVGEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTD....... 210
7 -5.550IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  6  3..........................................NRDNKKAITKKGMISNRLNKFSIVGTASILVGAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIENSQPQPTPSKVDNQVTDATNP.... 214
8 -5.300IDP02163 phosphodiesterase [Bacillus anthracis str. `Ames Ancestor`] GBAA3914 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  9  4TVWILISILLATVGAVVGFFVRKSIAEAKI--------NGAANEAKRILDEANREAEALKKEALLEAKDEIHTLRTEAELEIRDRRSELQKQENRLMQKEENLDRKDETLDKRELQLEKKEDSLVARQQQIEELESKVGELVQKQQTEERISNLTREQAKAII-----GKVESEVSHEIAVMVKESEVR----------AKEEADKKAKEILSLAMQR......................... 200
9 -5.130IDP06504 Surface protein from Gram-positive cocci, anchor region [Enterococcus faecium DO] EAN10897 [Enterococcus faecium DO]  ali follow..  12  2............................................................RTKQVLGALVILFAVSTSVPQWTVYGESISSESESREVETTETTDAGNETKSSTSQTETNTETTVETSVTSTDQETTATTDNQQTEEATATKMSNDES-----SSAKVSDKENGTENDDIGKGENFNGKEYLNYFGKQMTENGPTEDIKSKLIELLVT......................... 157
10 -5.020IDP92602 myosin light chain 2, putative [Toxoplasma gondii ME49] TGME49_097470 [Toxoplasma gondii ME49]  ali follow..  14  266......................................................................................................FAPSNKEIASLPEKVDYKTFQDFLGVAMHPDDTQESFRSFFSSFDTQATGDLSKKQVCNILQMWGEEPLSPAEAAAFCELAMGKENTISITVLIDMLQEG......................................... 365
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;