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Query: PB003645 Q65HI2_BACLD/1-230 PB003645; Pfam-B_3645;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNKRTWIEKLIGHLLPKDEKDGKKLTKYHYFLLLFVLGVSFMLVSQIFSSEPSQEPAADQPAASQKATSESTVQSGEGEKEVFKPASDDKPKESIQDYEQEYENQLKDILETIIGVEDVSIVVNVDATSLKIFEKNRKTQETSTNETDKQGGKRTVSEMSSDEEIVIIKNGDKETPVVVQTKKPDIRGVLVVAQGVDNVQIKKTIIEAVTRVLDVPSHRVAVAPKKMKEDLast
1 -63.900IDP91195 Stage III sporulation protein AG BAS4091 [Bacillus anthracis str. Sterne]  ali follow..  41  5.DKNSKFSFFRNLLNEKESNEKGKKVTPKFLLVLLILGMLLMFSSSFFSSKKE-----------EVPVFKEQKTQNQEKDVPTFGQKNNDNMSNVEKYEKAYEQELKAALEEIAGVKDVTINVNLDSSEEKILEKNTVKRSQTTGETDKTGGKRKVEDESLDEKTVIIREGDKETPVVLRTEKPKVRGVLVVAKGVDNIQVKAMVKEAVIRLLDVPAHRVSVSPKN.... 220
2 -62.500IDP04032 stage III sporulation protein AG [Clostridium perfringens ATCC 13124] CPF_2081 [Clostridium perfringens ATCC 13124]  ali follow..  24  1..........MHELKEKIANLFKQKNITNLIILLLLVIMFYLVVSYFTGVNNIT----------------KSEKTNLEKVSKEDMNSNSQKDSEVLSYQEKQEKDLERILGKINGVGSVDVVINFQSSEVKVPAVDNSSQKSTTEETDSEGGTRVNSQETDGDKIVMSNSSNGSEPVILKTEKPEVLGVMVVAEGAEDSKIKYEITKAISSLYNISVDKVNVLAMKK... 201
3 -10.100IDP05190 gene: fliF; flagellar MS-ring protein [Clostridium difficile 630] CD0248 [Peptoclostridium difficile 630]  ali follow..  13  191...................................IKSVMALISGSVTNIPEKNVQVIDNKMNLLSEGILEDENVDENNQPINSGISVDKNKASEQALNKQLEKSILEMLEPIFGKGKVKATVNADEKTEIKIDPDKVAIKETRSKNSSKSAANNVQGVDANMNNQGNNNGTNTEDSLDESFEYETGTASVAIDGKIAKGVQADVEDIVNNAIGMDGARLSVVSMV.... 406
4 -7.890IDP91493 putative type III secretion lipoprotein [Vibrio parahaemolyticus RIMD 2210633] VP1690 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  14  97........................................................................................SSPLAERARLVYAKSQELSSTLSQIDGVLVARVHVVLED----------------------------------------------QDLRPGERPTPASASVFIKHAADVAPQIKLLVNNSIE---GLNYDRISVVMVPSS.. 192
5 -7.430IDP91870 unnamed protein product [Acinetobacter baumannii] CAA30578 [Acinetobacter baumannii]  ali follow..  8  2....................................................................................................ELPNIIQQFIGNSVGQSPSDVYSFNRNNETFFLKRSSTLYTETTYSVSREAKMLSWLSEKLKVPELIMTFQDEQFEFMITK---AINAKPISALFLTDQELLAIYKEALNLLNSIAIIDC.......... 124
6 -7.020IDP91193 Stage III sporulation protein AF BAS4092 [Bacillus anthracis str. Sterne]  ali follow..  5  27....................NSNLQKYVKFVVSLLLVVLILTPLFKLLQTDVNEV-----IANFNEEKYVAEGSVKNSIDSKKKEIQALTRAYSLEEMATKMKKEVGKEFEKQYGMSVSEIQIVAAESTAEVKSAKDIQSVVVTLKEKERSKNDAIE---------------------------TVKPVEI-EPPKKVEETNVEMKDFFSSRWQLENKQIQVQMEGRTGR 206
7 -6.840IDP91797 neomycin phosphotransferase [Escherichia coli] CAA23892 [Escherichia coli]  ali follow..  6  3.............................................................................................EQDGLHAGSPAAWVERLFGYDGCSDAAVFRLSAQGRPVLFVKTDLSGALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLG----EVPGQDLLSSHLAPAEKVSIMADAMRRLHTLDPATCPF........ 133
8 -6.790IDP05507 putative lipoprotein [Bacillus anthracis str. Ames] BA_5374 [Bacillus anthracis str. Ames]  ali follow..  11  3............................KLGLITALFALLFSSFT---------------------DNSPLDKKVKEEAKRTEKEKGPKLTKMSTESFNQSISQGAKKRALAMDGIIKSAAVNS---NLDLYIAVIPEHHERFGLKPLRKKLQKQLSDEHPTFDVRVSTDKK.......................................................... 124
9 -6.740IDP93943 secretion system apparatus protein SsaJ [Yersinia enterocolitica subsp. palearctica Y11] YP_006007034 [Yersinia enterocolitica subsp. palearctica Y11]  ali follow..  17  97........................................................................................TSPGQEQAKMVYLKEQQLESMLSHMDGVIQADVTIAMPAPT------------------------------------------------DGKSSVPHAASVFIKYSPEVNPQIKNLIRDGIP---GIDFSQISVVMQPTN.. 190
10 -6.640IDP91194 Stage III sporulation protein AH BAS4090 [Bacillus anthracis str. Sterne]  ali follow..  13  3..........................KKQTVWLLTMLSLVVVLSVYYVTTPDKMNTASPATGEKIGQEKQGTDKAVTNETPIKETTKESSNKENTSKETPNKETNKETDKKESATKETSKKEANVTVQSSDENFTALRMQMEDQRSEQKARLQEVMNSAKSSATEKSKAKDNFDAITTMETKQELLETVIKSQGGYKDALVRNKIIQLVRSEGGSKDVGVKFDPPTK... 223
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;