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Query: PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MCTTNAVNEKISYTINMDTQKKHNLSGTIILVSCFLLLAGACDNSDRIETETQANGVLLNFNASTIDATTTETRSFVPIEGFAKNEYIFGMSVTKDNASRGEIFEGSRNLKATMSRPSGDAPWNWEFSNNASGTVVTPRGPEGKPLRVIAYYPAIAGTENFTDGIPFDFTQTNNPQQKEILYNTNTSYTIPSSGGSDKVTIPLKFQHAYSWISIKVTKSVDKGSHKLSGVSIDNLSGGWIKNKGKINPATGMAMQGAIQGPIGEVRTAEVLDPSGDTATPIIYDFLVPAFMDRNVKDDDLVFTLIIDGKKEIFSLGREHLNNDGDTYGFKQGYANTYNVEFNNSSLNMRLLNWTSTRIDGDFGQNVTNPTNYQEMSFYYAEDNGGWTTALast
1 -13.200IDP05580 putative lipoprotein [Bacillus anthracis str. Ames] BA_0936 [Bacillus anthracis str. Ames]  ali follow..  15  1..................MLKKL----ILVLGSAVALSLVACGDSTKEASNEKKEEPKQEAKKENKENKESKK............................................................................................................................................................................................................................................................................................................................ 52
2 -11.500IDP05607 putative lipoprotein [Bacillus anthracis str. Ames] BA_4862 [Bacillus anthracis str. Ames]  ali follow..  10  1...................MDRHMKFSMFMFLGVVLIILAACTTKSVEQVAVKEVPKE........................................................................................................................................................................................................................................................................................................................................... 39
3 -11.400IDP05670 hypothetical protein lmo0617 [Listeria monocytogenes EGD-e] lmo0617 [Listeria monocytogenes EGD-e]  ali follow..  8  1...................MKKLKSILLLMGIITFALALTACGGTEDKASTEKIETAKAETKKKSNPNELGDYKVEILSSEVVKDFEGNNAIAIKTKFTNN----------------------------------------SKENISFMVAIDQQAFQNGTQLETTVSADASMGGSEKDVQPGGTLEVTELYKLQDTQNTVDIEATELISKKSFELK............................................................................................................................................................................ 164
4 -11.300IDP05442 putative lipoprotein [Bacillus anthracis str. Ames] BA_0171 [Bacillus anthracis str. Ames]  ali follow..  18  1..................MSK--KLLSLFSAVIVAAFVITGCGQSDTTNKEQKENAAKENKTEKTDTTKENKPEEKNPKTR.................................................................................................................................................................................................................................................................................................................... 61
5 -10.900IDP04197 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2510 [Clostridium perfringens ATCC 13124]  ali follow..  13  1..................MKKLLVP---VLVIIIFALLFVGCTNSSNSSSDSSVEIINSNQQNSNSNNNNSSNNDTKKSDSNNASHK.............................................................................................................................................................................................................................................................................................................. 66
6 -10.800IDP05010 putative lipoprotein [Bacillus anthracis str. Ames] BA_4934 [Bacillus anthracis str. Ames]  ali follow..  12  1..................MKKVLML---FVLLLTASILLIGCSTKKEKAGMNLEKAQKVEIESLTDSSEKKVITDKKEIEKLFE................................................................................................................................................................................................................................................................................................................. 63
7 -10.800IDP05588 putative lipoprotein [Bacillus anthracis str. Ames] BA_2883 [Bacillus anthracis str. Ames]  ali follow..  8  1...................MKVYVKIALLCLTFTCIFALAACKGTDEKKETNPTSENSKNEQNTSSEGKKEPEVKSNTDSNSKDIVI.............................................................................................................................................................................................................................................................................................................. 68
8 -10.300IDP05695 hypothetical protein lmo2080 [Listeria monocytogenes EGD-e] lmo2080 [Listeria monocytogenes EGD-e]  ali follow..  9  2.....................MTGFKKVILPVLLVVLFLAGCNQAEVPALVLDGTITDTSLLEN..................................................................................................................................................................................................................................................................................................................................... 44
9 -10.200IDP05125 putative lipoprotein [Bacillus anthracis str. Ames] BA_4310 [Bacillus anthracis str. Ames]  ali follow..  8  1........................MKKLIMTLFIAMLALAGCNNKEEPKKEQKLEAVKVAVQTNPKEIKP------------------------------------------------------------------------GEKTEVQA-------------LVTQGKEKVTDADDVKFEVWKAGDEKHEMLEGKHKGKGVYAVEKTFETIIAHTNAREMHVMPE-VKVAVGN-------------------------AKVEDAKKENSDHGAGHGDHKSDTMIHLMAGDIKANAESTMKVHLKQKEEALTIPAKEGNKGEYETKHTFKENGSYKVKVHVKKGEETVEVK...................................... 246
10 -10.100IDP06159 hypothetical protein jhp0866 [Helicobacter pylori J99] NP_223584 [Helicobacter pylori J99]  ali follow..  9  1..................MNKKHRLAF-LGLIVGVLFFFSACQHRLHMGYYSENYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYVRIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMANSHFILDWYDV---VLQKRVL--YVDGSVSGRTCGYQMLYRDLIKSTIKRIDFN.............................................................................................................................................................................. 199
11 -9.790IDP05009 putative lipoprotein [Bacillus anthracis str. Ames] BA_4237 [Bacillus anthracis str. Ames]  ali follow..  12  1......................MKAWKSIFVLCSFLLMLSGCFHQEEKKVEPKKKESI-------PETKEYGGRELKKVGQKVKETGWGTFKLEQIHSVNQTFEVAPMKIH--------------------------------QDVKVISLSQMSKDAKNTLKVYTALTPEEVKRRLGDKVSQEDAELYASLSGTEISDTIRY-------EITYKVENSGN------KNMQFFSMNDVVINDKQHFKVATQNFL---YDEDTLVGTKNVSREDYKPGETREGIIGLILDDGKEKVKDIKFTTDNAVAGDAEAQD---------------VVKEPQTFNISLSE.............................................. 253
12 -9.530IDP05658 hypothetical protein lmo0207 [Listeria monocytogenes EGD-e] lmo0207 [Listeria monocytogenes EGD-e]  ali follow..  10  1...................MKMLKKGTAVLFVMIMAVMLVACGDKEETKTSQNGVDSKLTYTYKGDKVTKQTAENTMSYASLGVASK.............................................................................................................................................................................................................................................................................................................. 71
13 -9.340IDP04392 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1500 [Clostridium perfringens ATCC 13124]  ali follow..  10  1......................MRVLKGVILAIIPAFLFMGCGEFSKNDVASKNKGYRIDLNYEVYKEGKEVKNEPILTSVSETYEKGKENITLGINFKDDNRINCLLGGDGAYSRHNYKAEENIKDYFSANFADYDLELEKGKRVCLYYATLGNGISSNVIGMNMDSEEIKETINRNNDCIFLSISVDDFSE.................................................................................................................................................................................................... 202
14 -9.330IDP05121 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_0915 [Bacillus anthracis str. Ames]  ali follow..  10  1..................MLKKFTT---CILGGALVFNLSGCGNTSDKTSSESKETNSKQEEKNVQTTDEAKTKENTKQKNTEQTKE.............................................................................................................................................................................................................................................................................................................. 66
15 -9.320IDP95373 set238a-008 [Vibrio cholerae]  ali follow..  8  1MCL-RCGTKKKIVIKELAIRASKENKMKKMILLLSVLLLNSCSTNAEYKTEQ-------PWAWSISVTMPSFYPANVTQVYGVNDKENWTALLHGYLHTMRNSELKRIQERFTDYDGFGLSLLNTTMGVQIGTGTTHL--PDTLYLYWVSL------FDTKFYVTKYEIPT----SVKQLIATKTTYTRRDGAIVDSCYRAEFIFGLL-GQAKVWLD............................................................................................................................................................................ 201
16 -9.190IDP05445 hypothetical protein lmo0821 [Listeria monocytogenes EGD-e] lmo0821 [Listeria monocytogenes EGD-e]  ali follow..  10  1..................MKKII-----FTVVLSLVLVLAGCADVTNTVKVDKKGEATISFDIDISSVAGIFASSYSDE...................................................................................................................................................................................................................................................................................................................... 56
17 -9.180IDP05592 putative lipoprotein [Bacillus anthracis str. Ames] BA_3194 [Bacillus anthracis str. Ames]  ali follow..  6  1......................MKILKFGIIGALSITLLIGCTSNSNETKASNKEASTAVKEKEIVYENVMFEQKEVRKLEISPVNSKSSNQVVNTEN---------KTIFTSMESAEKKTLLLDQEAKNYIHSKMKVTYQDNSIQEFFVWIESDSDASDETHGEGYDLREDNSKKIIQFFEKE............................................................................................................................................................................................................. 159
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.