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Query: PB006101 JCVI_PEP_1096697844517 /source_dna_id=JCVI_ORF_1096697844516 /offset=0 /translation_table=11 /length=371 /full_length=371, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst YLISFSFLLYSCDEKPKSGITNPSFLPNASGENNEMLIVMDSTKFKGKIGRELVDIYSSYISGLPQPEPRYDLRYIKPRKFNSILKHAKNIVVAFSLEGNSLDSEILRRNFNSESLDKIQSDSSLFYFVRRNQYARGQVVLYLFSENDDDLYSKIKRNRNSILKFFDDELKKRVDTEIFRKVENNLMDKIFTDHNIKIKIPYGYDLAKSINEENSNFFWLRQLDLEYDKNIFLYYEDYSNSELKNFYDVFNSSDINIKPIRAYISKKYLRDSEKSKIFMDIQDVFPIQSNKINFKGNLAIESRGLWKLSDISAGGPFLSKIIYDSKLKRVYYLEGYVYAPGLKKRGLMQEISSILMTFELast
1 -8.170IDP06159 hypothetical protein jhp0866 [Helicobacter pylori J99] NP_223584 [Helicobacter pylori J99]  ali follow..  7  12LIVGVLFFFSACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDSDAMTSYYINVIVYELQKL----------FYNVFTQAEFPLDKAK----NVIYVRIVRNISAVPFYQYNYQLISQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSG-----RTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ...................................................................................................................................................... 219
2 -8.050IDP06088 hypothetical protein jhp0340 [Helicobacter pylori J99] NP_223059 [Helicobacter pylori J99]  ali follow..  8  6TLLVFLFFCLGCVSNFNEDTYTLDLVLEKKIQASRKGEITQDNVPIITA---IATHLNDVDSGTYYDHEYFLVEIFTQNNDWIDDGYISYELFGTKPTGSEPL-----------WVREITRDEFDGILETTNRWSRAFLIAFDKLDYLAVQEAKLELDAYSLGKIVFNFAYQVPLPQF..................................................................................................................................................................................... 169
3 -7.710IDP05485 putative lipoprotein [Bacillus anthracis str. Ames] BA_3234 [Bacillus anthracis str. Ames]  ali follow..  6  12FIAIVIFIIAGCSNMIGNEDQTIKVQKHVDDTYEDLKVVTDNKQVQ-QVKKILNDAHFENKKVQMSRPADYHFVF------------------------------------------QFKNPKIEAKATLYQIWVIPNKDKIEIIAGNSQYVQLEGKNAATLFQIITGEKLVE.......................................................................................................................................................................................... 141
4 -7.460IDP90329 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_548 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  10  9SLVFFSLLLSACGYTVLSPHYVEKKFS----LSEGIYVCPIEGDSLGDLVSSLSYELEKRHTRSQGTSSGYVLK--------SLFNETDENIGFAYTPQKPDEKPVKHFIVSNEGRLALSAKVQLIKNRTQEILVEKCLRKSVTFDFQPDLGTANAHQLALGQFEMHNEAIKSASRILYSQLAETIVQQVYYDL..................................................................................................................................................................... 193
5 -6.960IDP04058 ABC transporter, solute-binding protein [Clostridium perfringens ATCC 13124] CPF_0556 [Clostridium perfringens ATCC 13124]  ali follow..  8  15.TAIAASAFVGCGNKEEAPKDNEKPSTEQAEGSGEKKVLEIAVFEGGFGKDYWDACIDA----FEAEHPDVEVKMEANPKIGDIIRPK-DFIYLSTNDQSGIANALIKDKALVDLSDVFDRED-------------------PDNPGQKLKDKILPGFLDTPLTTPYGDGKVFLAPLYYNVTGMWYNKALFKEKGWE--VPKTWDFELGKKAKDEGIALYTYQGQAPGFPMLASAAGEEAVEKIFNYEEGAWKDPNVKKALDVFQRMADEDMVLNGTVGMTHTQAQVEF----LNGKALFLPCGSWLEGEMKDAIPFMAPPAFKEGDTPYVT-EQMYIPAKSDQVELAKEFLAFQYTDA 365
6 -6.810IDP90639 lipoprotein, NLPA family [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0771c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  8  1.MNLFKIIILACILNLSSLFAQNITIGATPNPFGSLLELMKDDFKNKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAPVGVYSKKI--KNLENLKEGAR--VAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKNPKKLKFIELKAAQLPRALDDVDIAIINSLGAGLNPSKDTIFREDKNSPYVNYVVVRSEGKNS.................................................................................................................................... 225
7 -6.770IDP05125 putative lipoprotein [Bacillus anthracis str. Ames] BA_4310 [Bacillus anthracis str. Ames]  ali follow..  9  7TLFIAMLALAGCNTNKEEPKKEQKLEAVKVGEKTEVQALVTQGKEKVTDADDVKFEVHEMLEGKHKGKGVYAVEK----TFETDGVYHIIAHTNAREMHVMPEVKVAVGNAKVEDAKKENSDHGAGHGDHKSDTMIHLMAGDIKANAESTMKVHLKQKEEALTGAEVQLEIWKDGVEKHEFIPAKEGNKGEYETKHTFKENGSYKVKVHVKKGE................................................................................................................................................. 234
8 -6.730IDP91126 extracellular solute-binding protein, putative [Staphylococcus aureus subsp. aureus NCTC 8325] SAOUHSC_00176 [Staphylococcus aureus subsp. aureus NCTC 8325]  ali follow..  9  11.AVVMLLIVTACGPNRSKEDIDKALNKDNSKDKPNQLTMWVDGDKQMAFYKKITDQYTK------KTGIKVKLVNIGQNDQLENISLD-DIFFLAHDNTGSAYLQGLAAEIKLDELKGFNKQALKAMNYDNKQLALPAIVETTALFYNKKLVKNAPQTLEEVEAN-----------------AAKLTDSKKKQYGMLFDAKNFYFNY--------PFLF--------GNDDYIFKKNGSEYDIHQLGLNSKHVVKNAERLQKWYDKGYLPKAATHD-----------VMIGLFKEGKVGQFVTGPWNINEETFGKDLGVTTL-GKPMKPFLGVRGWYLSEYSKHKYWAKDLMLYITSKD 331
9 -6.440IDP05001 putative lipoprotein [Bacillus anthracis str. Ames] BA_1090 [Bacillus anthracis str. Ames]  ali follow..  12  10.LLSFVIGMTACNDETSSSRTLLSIGKPAKDNVIYFTHTDNKRK-------------------IQEIQDMFQNKKWKRNETFSTVNKTPDVVFSIDEDNTGLPALYVTVYFHEDGADVLNLYGE---------------YTSFNKQELAMLREKMSAYYPKMIFGLVS............................................................................................................................................................................................... 142
10 -6.330IDP05313 putative lipoprotein [Bacillus anthracis str. Ames] BA_1061 [Bacillus anthracis str. Ames]  ali follow..  6  7VIGITFLILAGCSNGDFEKEIDAGKTALTNKEYKNALSSFERALDEKKDDSGAIVLVEQ-TKIMMEAVKLKE-----EKKIEESIQSFEKVENMKDGNAKKERTALLAILEQKKKYSEQLTKSEELINKKNYAEAKETLNKLVLETKDNKNLEEYNKKAVGLVTKIGEEEKTAKSKATAKAQKTSAVTS.......................................................................................................................................................................... 195
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.