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Query: PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7], from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ASYISVPRDLTKVKSKVMFNLTKRQLICFGMAVLIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLAMYEKNGQPLEVILEHMIQAIFQRPKIRPYVTDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEKNIHNAGGVKQSRPDGSKGNRKKRPLast
1 -9.200IDP91420 hypothetical protein VV1_0667 [Vibrio vulnificus CMCP6] VV1_0667 [Vibrio vulnificus CMCP6]  ali follow..  14  16.........IPAVGFELVFNVPPRALIYCALGGAIGHGSRYLMMKFGIPIEWATFFAATLVGMIGVYWSRRLLAHPKVFTVAALIPMV--PGVFTFKA........................................................ 102
2 -6.390IDP04017 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1035 [Clostridium perfringens ATCC 13124]  ali follow..  8  1...........................................................................MRKLVSLLLSIGILSGAFIGCGRNNQKEVSDNENSSNISNEEKNNKEVKNDNNDKKESKDSENDTKDNKDKNEQRDKE. 78
3 -6.360IDP01511 hypothetical protein VC0794 VC0794 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  8  10..........ASYSECLFNPLTLAPWDYLARLARLFFSPFSTLFLPLEVTMQSTSLFLEGINLLTLGM----GFVFIFLIFLVYATRAMSQLIVRFAPPEVPAKTTNKKASANKAKANPNQNQGELLAVLTAAVHHHKTQQK............ 137
4 -6.300IDP00531 gene: ccmD; putative heme exporter protein D YPO2737 [Yersinia pestis CO92]  ali follow..  13  43................................................................................................HKQLLADIHRRQAREQRIRQAQLNQTSMHQVPLHQAPLHQAPLQQAPQHIANLQEKRP 100
5 -6.150IDP92694 TpgX protein [Staphylococcus aureus subsp. aureus ST398] YP_005735174 [Staphylococcus aureus subsp. aureus ST398]  ali follow..  6  1...........................................................................MKKLVTGLLALSLFLAACGQDSDQQKDSNKEKDDKAKTEQQDKKTNDSSKDKKDNKDNSKDVNKDNKDNSANDNQQQS. 78
6 -5.840IDP91944 ABC-type antimicrobial peptide transport system, permease component [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100000842 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  11  321..EIGLRKALGATRANILIQFLIESMILTLLGGLIGLTIASGLTALASIPVALFSLAVSASVGMIFGVLP.................................................................................... 403
7 -5.790IDP91588 YfiW [Bacillus subtilis] BAA24463 [Bacillus subtilis]  ali follow..  10  22FVIYQSKKELTNLS-MVINGLERTDLFMLVLIGLLAVAAMYVLKYSLRLSITNGKVFRVSWIANSFN----NVLGFGGLAGVGLRMMFYKE............................................................... 116
8 -5.550IDP05677 hypothetical protein lmo1068 [Listeria monocytogenes EGD-e] lmo1068 [Listeria monocytogenes EGD-e]  ali follow..  9  5..................................................MVIISIISLVALLGACG-----------------------------NNDNEKDQEDKSTTDSTTKKAKSSSNESNKAAETKENDTNDKAATTDKGSSNPTKEE. 78
9 -5.540IDP90904 gene: ubiA; 4-hydroxybenzoate octaprenyltransferase [Yersinia pestis CO92] YPO0311 [Yersinia pestis CO92]  ali follow..  9  70.ADRHIDGFVKRTASRPLGTISEKEKILFVVLILLSFGLVLTLNSMTIWLSLAALALAWIYPFM.......................................................................................... 135
10 -5.480IDP91549 hypothetical protein CPF_1846 [Clostridium perfringens ATCC 13124] CPF_1846 [Clostridium perfringens ATCC 13124]  ali follow..  6  82....................LRFSHRASVLIGLMLIMTSKEVFFK---VKRAYYVTLTLLIVGGAFAFVK--DLDYKEGIFILGVIILLILSKKSFYRKS...................................................... 156
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Reed JC, Doctor K, Rojas A, Zapata JM, Stehlik C, Fiorentino L, Damiano J, Roth W, Matsuzawa S, Newman R, Takayama S, Marusawa H, Xu F, Salvesen G, Godzik A.; RIKEN GER Group; GSL Members. Comparative analysis of apoptosis and inflammation genes of mice and humans. Genome Res. 2003 Jun;13(6B):1376-88.