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Query: PB007011 gi|160888195|ref|ZP_02069198.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492]gi|156862330|gb|EDO55761.1| hypothetical protein BACUNI_00603 [Bacteroides uniformis ATCC 8492], from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst RQSEDSRHSKYVIRIICEGEKTEPLFFTSLCDKLLDENGGEEEWDVKTIPQPDIPEEKPSMADRGLYKNKKKRVKGKKDKLQPEVQGQPPLSWIRLSRKKLNEGVDEAWAVFDKDEHPARKDAFEEAEKLIDDKKVNIAFSSRSFEYYLLLHFEYLYHPFHATECGERIDGKKVNYNCMTEKSKENACHGEKCINGYARLKKYWNETKTSQSTFPLIEKRLKAGIINAKRLRIESNSKENCPIYDRNPYTNVDKLVCRLLast
1 -6.490IDP91204 shikimate 5-dehydrogenase [Bacteroides thetaiotaomicron VPI-5482] BT_4215 [Bacteroides thetaiotaomicron VPI-5482]  ali follow..  9  101..................GYNSD--FTQSIQPLLQPQHKKALILGTGGASKAVYHGLKNLGIESVFVSRTHKTDDMLTYEELTPEIMEEYTVIVNCTPVGMYPKVDFC-LLYDLLYNPNVTLFMKKGEAQGAVNGLEMLLAFAAWEIW............................................................................................................... 246
2 -5.840IDP91596 gene: vanXst; D-ala-D-ala dipeptidase [Streptomyces toyocaensis] AAD02118 [Streptomyces toyocaensis]  ali follow..  10  49......TKALCAALERARDEAASLGFGLLLWDGYRPQRAVDCFLRWSQQPEDGRTKSRHYPNIARAEMFEKGYVAARSGHSRGSTVDLTLYDLATNELVPMGGDHDL----MDPVSHHGAQGLAPVEAR--NRQHLRSVMESCGFEWW---HYTLADEPYPDTYF.............................................................................................. 203
3 -5.770IDP91773 gene: vanXB; D,D-dipeptidase [Enterococcus faecalis] AAB05628 [Enterococcus faecalis]  ali follow..  10  43......TKAVALALREAQIHAARLGYGLLLWDGYRPKSAVDCFLRWAAQPEDNLTKEKYYPNIERAELITKGYVASQSSHSRGSTIDLTLYHLDTGELVSMGSNFDF----MDERSHHTAKGIGNAEAQ--NRRCLRKIMESSGFEWW---HYKLIDEPYPDTYFNFAVS......................................................................................... 202
4 -5.190IDP95165 glucosyltransferase MdoH [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002918834 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  7  235.DEPLNPAHRTALIMPICNEDVDRVFWESVKATGNAAHFDVYILSDSYNPDICVAEQKAWMELIAEVQGEGQIFYRRRRRRVKRKSGN-----IDDFCRRWGSQYSYM-VVLDADSVMTGECLSSLVRLMEANPNAGIIQSSPRA--------------SGMDTLYARCQQFATRVYGPLFTAGLHGHNAIIRVKPFIEHCALAPLPGEGNFAGSILSHDFVEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRD. 487
5 -5.170IDP91894 peptidase, M50 family protein [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100007895 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  9  108...KEDESDQRIILMLSGGLLTRSWYFAGTWIFLNLSFFLNNILPVDITDGAKIWELLQHPENTKYAYLVLRHSAQTLLAPQEYDLKDFVQAVPEDARGSFADGV-QGEVSILEGKEEVAKQQFQALLERTTTPMMQTVAQLSLLHIALLEGDFEQAEQYASIRQVKSFLSLKLSNLQVRKDVVQTHKAMKIARQKMDSSRMLRDEKRYYENLLAELEKEMLEGTEDGTR............................. 360
6 -4.980IDP05492 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_3540 [Bacillus anthracis str. Ames]  ali follow..  13  39................................................................................................................GKSPYYNQSAVTKEKKWIDSNSYVELKFSTTCKTAW............................................................................................................... 77
7 -4.940IDP91776 gene: vanXD; D,D-dipeptidase VanXD [Enterococcus faecium] ACM47288 [Enterococcus faecium]  ali follow..  12  43......TKELGVALRKAQKMAEKLGYGLLLWDGYRPQCAVNCFLNWASQPEDNLTKKRYYPNIKRNEMVTKGYVASQSSHSRGSAVDLTIFRLDTGMLVPMGGDFDF----MDVRSHHAASGLSEEESKNRQ---LRYIMESSGFEWW---HYVLADEPYPDTYFDFCIA......................................................................................... 202
8 -4.780IDP90612 NMPDR 243277.1.peg.3916 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  16  131.........................................................................................................................DALIEAVKKAQARGEKVVMTNGCFD---ILHAGHVSYLNHAAELGDRL---------------------------------------NTDESVKRLKGPVNSTDRRMAVLAGLGAVDWVVPFSEDTPQRLIAAVLPNL 233
9 -4.750IDP00059 fibronectin/fibrinogen-binding protein, putative BA_4013 [Bacillus anthracis str. Ames]  ali follow..  11  355.......ENGGTVKIALDPLKTAQRYFQKYQKAKNSIVVVEEQIEKTKEEILYFDSLLQQMEAASSKDIEEIREELAEEGYMRNRKTKNAKKKPTKPVLDKYVASDGTEIFVGKNNKQNDYLTTKFARRD---------------EIWL--HTKDIPGSH-AEETLLEAAKIAAYYSKAKESSS........................................................................... 525
10 -4.700IDP91167 gene: aroE; shikimate 5-dehydrogenase STM3401 [Salmonella enterica subsp. enterica serovar Typhimurium]  ali follow..  5  111.ERLNFIRPGLRILLIGAGGAS-----RGVLLPLLSLDCAVTITNRTASRAEALAKIFAHTGSVHATDMDKLDGCEFDLIINATSSG-----IRGEIPAIPASLIHPSLCCYDMFYQKGNTPFLSWCVQQGAKRGMLVGQAAHAVLLW-------HGVLPQVEPVIEQLQQELLA.................................................................................... 272
FFAS is supported by the NIH grant R01-GM087218-01
1 4 2 0 2 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Friedberg I, Godzik A. Functional differentiation of proteins: implications for structural genomics. Structure. 2007 Apr;15(4):405-15.