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Query: PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MNILNNKNKRTSIFKALALCLFAAVSFTFVSCDDDMDIQQSYPFTVETMPVPNKVTKGQTVEIRCELKKTGDFANTLYTIRYFQFEGEGTLKMDNGITFLPNDRYLLENEKFRLYYTAQGDEAHNFIVVVEDNFGNSYELEFDFNNRNVKDDGVITVVPIGNFKPLTLast
1 -19.100IDP05125 putative lipoprotein [Bacillus anthracis str. Ames] BA_4310 [Bacillus anthracis str. Ames]  ali follow..  7  1........MKK------LIMTLFIAMLALAGCNTNKEEPKK-AVKVAVQTNPKEIKPGEKTEVQALVTQGKEKVTDADDVKFEVWK-------AGDEKHEMLEGKHKGKGVYAVEKTFETDGVYHIIAHTNAR-EMHVMPEVKVAVGNAKVEDAKKENSDHG..... 144
2 -14.300IDP05615 putative lipoprotein [Bacillus anthracis str. Ames] BA_5522 [Bacillus anthracis str. Ames]  ali follow..  7  1........MFKKV-----FVPLFAATVLISGCNKEVVKESPKDKVEQHKKNTDEVKINTVNGKTLMVDVKAKGEKLTY--AYYIYKGEEIVEKIW-------------KPENSLKYEVKEPGKYKVKAYAKDANKKIDVYTNEVTIEK................... 126
3 -12.800IDP05670 hypothetical protein lmo0617 [Listeria monocytogenes EGD-e] lmo0617 [Listeria monocytogenes EGD-e]  ali follow..  10  2..........KKLKSILLLMGIITFALALTACGGTEDKASTEKIETAKAETKKKSNPNELGDYKVEILSKDFEGNNAIAIKTKFTNNS-----KENISFMVAIDQQAFQNGTQLETTVSADASMG-GSEKDVQPGGTLEVTELYKLQDTQNTVDIEATE........ 148
4 -11.600IDP05460 putative lipoprotein [Bacillus anthracis str. Ames] BA_0985 [Bacillus anthracis str. Ames]  ali follow..  11  1............MKKIISICALTALSFTLIGCASTSATDKSPQAKQEHKQNAFQLNSANITDIEILQTTNNTTSKSQTDNKEMIQSIVSAVQKGTPKTITLDQKKR-KSAHSTITVTYKDDAKEEFLVWVDNKEQIT---IAKDKKKDKVEGVTVNIKNTKMMKDF. 150
5 -11.100IDP05454 putative lipoprotein [Bacillus anthracis str. Ames] BA_0190 [Bacillus anthracis str. Ames]  ali follow..  13  1............MRTLLSVLLALMLVPALTGCKAPAKEDTTSNKKTTEEAKNETPADLKLNFNEFSLDADYQDTKKDYEADYKNVAADKKMEAKTGDEAITKLSPLLQELKFDKGTPDQEVIDQVLNVFKLDKDYQKFELEVVFS...................... 143
6 -10.700IDP05592 putative lipoprotein [Bacillus anthracis str. Ames] BA_3194 [Bacillus anthracis str. Ames]  ali follow..  8  1............MKILKFGIIGALSITLLIGCTSNSNETKASNKEASTAVKEKEIVYENVMFEQKEVRK----------LEISPVNSKSSNQVVNTENIKTIFTSMESAEKKTLLLDQEAKNYIHSKMKVTYQDNSIQEFFVWIESDSDIVIAKASDETHGEGYDLR 145
7 -10.700IDP05612 putative lipoprotein [Bacillus anthracis str. Ames] BA_5233 [Bacillus anthracis str. Ames]  ali follow..  10  1...........MLKTIKNTLLFFLCLVVLSGCFTREGTIVGGKVHGGSNSIDGKYSFTGFATQDMDVKKG---ESWTFTFEDKTKQGTIKAYVLDSN---DNTILEVNSGNSKNNIKVSKDDTYKVKIITEEHGG---EFEISWKKEK................... 129
8 -10.600IDP05757 hypothetical protein lmo0881 [Listeria monocytogenes EGD-e] lmo0881 [Listeria monocytogenes EGD-e]  ali follow..  7  1...........MMKKKGYVLLIIALLSLTLNWLPEIAHAQKETTATTYTTATTSELMDMFLPY-PIQNPYIETTKNSAELMFVTEEAASITTETNNQTQSIAGSTE----NHQFTLANLQPGNNLVTITATMADGTSESKTITINLPEEP................. 134
9 -10.500IDP05407 conserved domain protein [Bacillus anthracis str. Ames] BA_1485 [Bacillus anthracis str. Ames]  ali follow..  8  1........MKNLV---IGLVALLFVVVGGFYIKKYQETTETVGDVQEVKWDVSNGKGNEKADIVFQLLNNKSSEVRGVNDQIRAV-----IVDGQLKHVQQTKPTFAGNGSYKVSSKIAKDEGYTIFLYEDKNKSVQSFAKKDFGKEIDE................. 134
10 -10.400IDP04392 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_1500 [Clostridium perfringens ATCC 13124]  ali follow..  8  1............MRVLKGVILAIIPAFLFMGCGEFSKNDVAKVSFEKLSEKEEQIL-NRVFFYKVKNISKNKGYRIDLNYEVYK---EGKEV--KNEPILTSVSETYEKGKENITLGINFKDDNRINCLLGGDGAYSRH---NYKAEENIKDYFSANFAGDYDLELE 150
11 -10.400IDP00500 putative copper resistance protein YPO1784 [Yersinia pestis CO92]  ali follow..  7  1......MFIRKVRSSCRMLSALIVLFVGLSS-----QQALAHAHLKAETPAADTTINAAPEALTLGFSEGIELNFSGVKV----TGPDNNVVKTGDLKLDPANNTQLILP------HALAAGKYHVSWHVVSVDGHKTKGTYSFTVK.................... 128
12 -10.200IDP05275 hypothetical protein lmo2686 [Listeria monocytogenes EGD-e] lmo2686 [Listeria monocytogenes EGD-e]  ali follow..  9  1........MKEFLFFAVFTFIMTIGVGVINA-PDNIQEAEVETFDLNGNIAQEKEIVGTEGTLGVMIYWYSGVYNCSFNAKINVSKGKGKIT---------------SAYNPWYQFYSPGLDVKKSKLSKTSSGS-SASYVFDCKNKISNWNVTLKASVSGKKLTTS 175
13 -9.960IDP05695 hypothetical protein lmo2080 [Listeria monocytogenes EGD-e] lmo2080 [Listeria monocytogenes EGD-e]  ali follow..  6  2MTGFKK-----------VILPVLLVVLFLAGCNQAEVPALVLDGTITDTSLLEN---NNELTVNGTLTWNGEKNDYASEVMITVSSNTAVTNATTGKAIKEEDTVRAVFPQGSNITSPAPGKVSENATSLKVT.................................. 125
14 -9.840IDP04317 putative lipoprotein [Yersinia pestis CO92] YPO0512 [Yersinia pestis CO92]  ali follow..  7  1MRSLFRV----------LPIFILTGCVLLSGCSWFSSSSRRIDLQVVAAPLINPGPNGQAQPLKVCILNKEGWSPPGLYQGTLCSGISGEVVSVTEYILAPTEVRQYS--AIAAEFQEMSNGKSLLTLKSDARADFNRVVLVD........................ 152
15 -9.710IDP05515 putative lipoprotein [Clostridium difficile 630] CD1687 [Peptoclostridium difficile 630]  ali follow..  10  1MNKIVK-------KSISLMIILTIFIFMLTACEKDEQPDSVDIQTEDKNEIKIDEGNAKVLNIGTKVENNSTFNISNVELIYNEYDENKKIISSDSKALLD---MTLMPGKVA--YIECGHKTFVKGVEVYAYEYEAEGKIVYVNLKENTINIRNNNIKLENSSQYE 171
16 -9.500IDP05448 hypothetical protein lmo2594 [Listeria monocytogenes EGD-e] lmo2594 [Listeria monocytogenes EGD-e]  ali follow..  9  1........MKKTS-----IIFIFCTLLFVTACSTSENQTQATEATGTIEQVETD---------AILINNFKEKKDKYNPEAAIRFDIVDKYYDETGTDLNKNDDVKIKDFPIQETSPAQIDPKYVQKIILLNK.................................. 119
17 -9.480IDP04197 putative lipoprotein [Clostridium perfringens ATCC 13124] CPF_2510 [Clostridium perfringens ATCC 13124]  ali follow..  9  1........MKKLL---VPVLVIIIFALLFVGCTNSSNSSSDSSVEIINSNQQNSNSNNNNSSNNDTKKSDSNNASHK.......................................................................................... 66
18 -9.470IDP05121 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_0915 [Bacillus anthracis str. Ames]  ali follow..  11  1...........MLKKFTTCILGGALVFNLSGCGNTSDKTSSESKETNSKQEEKNVQTTDEAKTKENTKQKNTEQTKEFDVTVKRVVERDKVGKESIGFQKPEDGHVFIVVEAEGKNITSEP-AFLPSVDLVDENDNAYQSDVWAAS..................... 156
19 -9.370IDP05647 hypothetical protein CD3457 [Clostridium difficile 630] CD3457 [Peptoclostridium difficile 630]  ali follow..  11  1MGGVIRLNVKFNIKGII-YGVIALVFVIGGFISMFVEKSKPIDYTVL-----------QRNSIPEKILDVMDKYTNEERALAAKIDNKIYIIVTRGNNKYGIEMDKIESKDVLRVKIKYKDKEDSFPYIVVETNMSELPDRIELNATK................... 144
20 -9.340IDP05580 putative lipoprotein [Bacillus anthracis str. Ames] BA_0936 [Bacillus anthracis str. Ames]  ali follow..  15  1...........MLKKLGILVLGSAVALSLVACGDSTKEASNEKKEEPKQEAKKENKENKESK......................................................................................................... 51
21 -9.290IDP05449 hypothetical protein lmo2595 [Listeria monocytogenes EGD-e] lmo2595 [Listeria monocytogenes EGD-e]  ali follow..  12  1........MKK--RGLLLVSVLMLFIFLTVACGSS--------------EDNEESGEISTKEIELTVDDPIIPTDENGEATIEGTVDPKSKLTIDGKAVKKDD-----SGRFTYTYSLTNDNVAEVDVKLLAVRKNYKDEKYTITITNNSKAYNDNMVKQEA..... 133
22 -9.240IDP05009 putative lipoprotein [Bacillus anthracis str. Ames] BA_4237 [Bacillus anthracis str. Ames]  ali follow..  9  1............MKAWKSIFVLCSFLLMLSGCFHQEEKKVEPKKKESIPETKEYGGRELKVEITYKVENSGNKNMQFFSMNDVVINDKQHFKVATQNFLYDEDTLVGTKNVSREDYKPGETREGIIGLILDDGKEKVKDIKFTTDNAVAGDAEAQDVVKEPQTFNIS 250
23 -9.150IDP04348 two component regulator [Clostridium perfringens ATCC 13124] CPF_2547 [Clostridium perfringens ATCC 13124]  ali follow..  10  564........................................KYTIDIFARNIKCKEGFDSRREVRFYVSEALPITGTKISTSDKVFKINEEINFSTKCEGGSRVCYEY-SRKSYYSFRPYVPGKYKVLVLTKSYYKKCAYEDFEFKVE.................... 686
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.