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Query: PB012108 A3U600_9FLAO/1-189 PB012108; Pfam-B_12108;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MLSLLLIEYNSITKRFLSGNIENSIFVNQQNAMAKKEKKQLKKRLLHKYRMVILNEDTFEERVSLKLTRLNVFILVTLTSLLLIAGTTVLIAFTPLKEYIPGYSSTSLKLKATELTYKTDSLETALAINNQYYESIKKVLSGDVKSTDIDKDSILEAARISIDSINLSPSEEDLKLREKVALEDKYNVFLast
1 -5.680IDP91495 putative type III secretion protein [Vibrio parahaemolyticus RIMD 2210633] VP1689 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  7  24.MAQVLHQFNYCPCQYLEQNWIVPKQPWLLNLDGWRDNPNFNLWCLEEWALAPVPETAFNK------PHHSLALLPPDALSTLMLTIGGALHSFAMRQVVLKKPKQCLNNVF-------DIARFLIQQGPMLLSQWPKGWQKALPDVMKEDEVERHMLKQGYAWMKFILASSSHDILLRWQ........ 192
2 -4.620IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  13  1...............................MINRDNKKAMISNRLNKFSI------------KYTVGTASILVGTTLIF---------------------GLGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETK.... 127
3 -4.220IDP06419 gene: ORF65; ORF65 [Human herpesvirus 8] YP_001129422 [Human herpesvirus 8]  ali follow..  8  1.MSNFKVRDPVIQERLDHDYAHHPLVARMNTLDQGNMSQAEYLVQKRHYLVFLIAHHYYEA................................................................................................................................ 60
4 -4.190IDP92641 gene: yjdJ; predicted acyltransferase with acyl-CoA N-acyltransferase domain [Escherichia coli str. K-12 substr. MG1655] b4127 [Escherichia coli str. K-12 substr. MG1655]  ali follow..  16  31..NLAIIEHTDVDESLKGQGIGKQLVAKVVEKMRREKRK...................................................................................................................................................... 67
5 -4.170IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  13  1...............................MINRDNKKAMISNRLNKFSI------------KYTVGTASILVGTTLIF---------------------GLGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETK.... 127
6 -4.080IDP05648 putative septum formation protein [Clostridium difficile 630] CD3492 [Peptoclostridium difficile 630]  ali follow..  19  6.................................................................KFSGQIIVISLFLGISIFSMMTGFVFEYTKAKEYKKEIAS--LNKQLKKTEIQINSLKKDEKSYEGDLEDIAR................................................... 76
7 -4.070IDP00782 staphylocoagulase precursor, putative SACOL0857 [Staphylococcus aureus subsp. aureus COL]  ali follow..  15  416.....................HNNVVEFEETSALPGRKSG------SLVGISQIDSSHLTEREKRVIKREHV---------------------REAQKLVDNYKDTHSYKDRINAQQKVNTLSE--GHQKRFNKQINKVYNGK.............................................. 508
8 -4.000IDP02679 Type IV pili fiber building block protein [Francisella tularensis subsp. tularensis SCHU S4] FTT0889c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  17  1..................................................................MQTHKQTGFSLVELMVVIAIIAILAAVA-----IPIYSSYKERAAIIESMNIIGNVKASIQN............................................................. 57
9 -4.000IDP04528 gene: napH; quinol dehydrogenase membrane component [Salmonella typhimurium LT2] STM2257_1_289 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  9  89AVIIAVLYALAGKRLFCSWVCPLNPVTDLANWMRRKFDLNQSATIPRHIRYVLL--EWINPVSLLGRSLIMGFSSGALLIIALFLFDLLVVEHGWCGHICP---------ALYGVLGSKGVVTVTAKKREKCNR....................................................... 228
10 -3.980IDP92605 clathrin coat assembly protein AP17, putative [Toxoplasma gondii ME49] TGME49_113450 [Toxoplasma gondii ME49]  ali follow..  12  1MIRFVLL-LNRQGKTRLSRWYEGGLSDQEKWKVESGVQAAVLQRQRRWANILDFRSYHL---VYRQYAGLVFVVCIDSRENDLAVYEGIQLFVEMLDKYFGTVCELDIIFHVDKVYFLLDQFIQAGEIVQTSPKLIVSRAK................................................ 137
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Pio F, Chu Z, Reed JC, Godzik A. PAAD - a new protein domain associated with apoptosis, cancer and autoimmune diseases. Trends Biochem Sci. 2001 Feb;26(2):85-7.