current user: public
If you have questions about the server, please let us know.

Query: PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320
# Score Template Links and tools%idFirst RFYCHEVVQRWISPDGKVTDMALLRGFLFCYCDVWALGSDMEVRPHNSLYDDVVARSCAYPKMRILPQLRRNGFKGDFHGISPVRLFKALLSDPRIETLMKGGEIEVMKHFLFNTRTADECWASYLIAKRHKYQIDNLSMWCDYLRMLKKLGQDLRNPKNICPEDFMAAHDNATRKIEAIHEKERAAEQRRWEIERREREQQRQLQRKKDAEDFIANKSKFFGLVITDEEIIVKVLESIDEYYNEGKTQGICVFGSGYYKKADTLILSARIGDEIIETVEVDLRTLEVVQCHGKHNQDTEYHERIIDLVNKNANLIRERMKALast
1 -6.580IDP05430 hypothetical protein lmo1265 [Listeria monocytogenes EGD-e] lmo1265 [Listeria monocytogenes EGD-e]  ali follow..  11  65...................................................................................................................................................................DNLEKDAPIIIK--TKKSEKTTVTKETKENVFPTDFYTMSDVQINSIEKDTTGKLS-------ENMTIKVLEYSVENV--VEGEEYDLTIDGYKNMEKGEEYTLFLEKNPDGDNYIKFPVEELSEEELFLDGGQATEETDSIEEIYQEVYQEVLEEYS. 220
2 -6.270IDP05379 gene: cccB; cytochrome c-551 [Bacillus anthracis str. Ames] BA_5417 [Bacillus anthracis str. Ames]  ali follow..  6  28..........................................................................................................................................................................................................................................KPSKQSASTDSAEQIKSCIGCHAKDLSGAT--------GPDLRKVGQKYDAADIEKIKGRGSMSP--QGEDAKKVAEWLAEHK..... 107
3 -6.030IDP06329 58 kDa phosphoprotein, putative [Toxoplasma gondii VEG] EEE34668 [Toxoplasma gondii VEG]  ali follow..  8  7.......................................................................................................................................QKVAELKAFIGMCERDPSILHRPELSFFKEYLQSLKAAIPAERQAGAGSPDRPTTSPVPEASSDDSSLESEVEEFDEESLKDSEVIPPET-GEKELTDDELDKLGKLKEEASAAERALEKYTEYTRRADVLLKLKRPVACIRALKLNPDSARAYKIRGKANRLLGKWREAHSDLDMGQK........ 214
4 -5.890IDP05473 hypothetical protein BA_2626 [Bacillus anthracis str. Ames] BA_2626 [Bacillus anthracis str. Ames]  ali follow..  12  61............................................................................................................................................................................................................................................ASPAQAGNMKSWMCNCLGRWGYL--RRNGVSGYTWQGGRRRKVSYRYQQISNYMCFA............................. 134
5 -5.820IDP93848 lipoprotein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001005557 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  16  84..................................................................................................................................................................................................................................QTGRFNVLERTNMEELKNEAAISGK-VTEFGRKETGDRQLFGIGKSQVAYAKVNVNVNTSEVVFSSQGAGESTLNGKVLDLAIREAVNNLVAGIES 216
6 -5.750IDP00840 HIT family protein SACOL1894 [Staphylococcus aureus subsp. aureus COL]  ali follow..  6  1........................................................................................................................................................................................................................................................MSETI--FGKILTGEIPSFKVYEDDYVYAFLDISQKGHTLLIPKKASANIFETDEETMKHIGAALPKVANAIKR 74
7 -5.740IDP06006 Hsp70 interacting protein [Toxoplasma gondii] ABG75606 [Toxoplasma gondii]  ali follow..  8  7.......................................................................................................................................QKVAELKAFIGMCERDPSILHRPELSFFKEYLQSLKAAIPAERQAGAGSPDRPTTSPVPEASSDDSSLESEVEEFDEESLKDSEVIPPET-GEKELTDDELDKLGKLKEEASAAERALEKYTEYTRRADVLLKLKRPVACIRALKLNPDSARAYKIRGKANKLLGKWREAHSDLDMGQK........ 214
8 -5.710IDP04251 gene: virS; sensor histidine kinase VirS [Clostridium perfringens ATCC 13124] CPF_1751 [Clostridium perfringens ATCC 13124]  ali follow..  10  213.....................................................................................................................VSKIIKNNKLKLENEFIKDKLEMEYKYYSNLKDNQEKVK----------RLYHD-IKNHIACIEGNNKETGIRKKYIDSLNSEIDKLNLGFNTGNEVLDVILNNKREKCMENNISLKV--EYFDICT-SNCIDNAIEACKKIKDNNRYISLKGNCVNNFYVIKIEKLNGDFLTDKKDKFLHGIGLKNIRLALEKYNGEIIIEPLD 423
9 -5.690IDP90295 dual-specificity phosphatase laforin, putative [Toxoplasma gondii ME49] TGME49_005290 [Toxoplasma gondii ME49]  ali follow..  11  354...............................................................................................................................................FVGSCPRQLKHKEELKVTCVVNLQTEQDLCNNYPDPIASSRSAEAVSQLYDGSGLRYVWLPTADMCDSARKIAVAN---------------AAFLLLGLFQSGHSV-HCNAGVGRSVA--AFLCFAVGLDLRKVNFLICARRPVAYWDEKAMKYGIGDYQAKFGHCRVVGEEAEERQHA 523
10 -5.490IDP95283 hypothetical protein A1S_0137 [Acinetobacter baumannii ATCC 17978] YP_001083224 [Acinetobacter baumannii ATCC 17978]  ali follow..  10  100............................................................................................................................................................................................................................................................VRSYTDPDQADARRAEIILNGLSADVIKSSENGKTWYRVIGPYDTQEAALAAQQTLQHSGIDSIVIKRK. 169
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 9 1   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Godzik A. Improving the quality of twilight-zone alignments. Protein Sci. 2000 Aug;9(8):1487-96.