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Query: PB018258 Q7MT99_PORGI/1-157 PB018258; Pfam-B_18258;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSETKERLCIYADFPYEFAVCAPRTDCPKREQCLRASAYDGVLARGLQKITVINPLIPTSEQGCKAFADNTPVLFAHGITHLYDELPHHAVQSLKHRLLTYFGKTTYYRIYRKERYITIQEQDYIRDSFVRAGFSSDLIRYDAMVYMYELQSAMVKSLast
1 -6.490IDP95337 hypothetical protein [Vibrio cholerae] AHX36902 [Vibrio cholerae]  ali follow..  10  100.........GTNHLPDTLYVHWVS----LFDNKFYVTKYDIPDNVKQLSATEVSYTRSDGAVFESCYRTRFVFGLL-GRAKVW-YLTELAPDQTPDRDSNGFKADTYKESSYIRNIQQRAKDAGVEL---------EPIPWDKVNKVYSINEIK... 239
2 -6.490IDP95346 conserved hypothetical protein [Vibrio cholerae MZO-3] EDT88112 [Vibrio cholerae MZO-3]  ali follow..  10  97.........GTNHLPDTLYVHWVS----LFDNKFYVTKYDIPDNVKQLSATEVSYTRSDGAVFESCYRTRFVFGLL-GRAKVW-YLTELAPDQTPDRDSNGFKADTYKESSYIRNIQQRAKDAGVEL---------EPIPWDKVNKVYSINEIK... 236
3 -6.430IDP95334 conserved hypothetical protein [Vibrio cholerae 1587] EAY35202 [Vibrio cholerae 1587]  ali follow..  10  97.........GTNHLPDTLYVHWVS----LFDNKFYVTKYDIPDNVKQLSATEVSYTRSDGAVFESCYRTRFVFGLL-GRAKVW-YLTELAPDQTPDRDSNGFKADTYKESSYISNIQQRAKDAGVEL---------EPIPWDKVNKVYSINEIK... 236
4 -6.110IDP95354 hypothetical protein [Vibrio cholerae] WP_000753349 [Vibrio cholerae]  ali follow..  10  100.........GTNHLPDTLYVYWVS----LFDTKFYVTKYDIPDNVKQLSATEVGYTRSDGEFFESCYRTRFVFGLL-GQAKVW-YLTELAPDEILDRDSNGVKFDSYRKSSSFADVQQRAKDAGVEL---------EPIPWDKVNKVYSINEIK... 239
5 -5.860IDP91472 putative type III secretion system EscU protein [Vibrio parahaemolyticus RIMD 2210633] VPA1354 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  12  218.TEMKNELKETEGSPE-----------SERKRQMREFAETPITKGRQPTFALANPTHILVPVCYDPKIERRPVVLKICTESLALEERKLEAMGIPIIEHIPLARAMYSKMKEGEDFLPKEFFNDVALIIS........................... 338
6 -5.820IDP91840 positive regulator [Streptococcus pyogenes NZ131] Spy49_0449c [Streptococcus pyogenes NZ131]  ali follow..  12  1........................................................................MKSKLG--ATLRKVRKGKQISLCFVADEHLSKSQISRFERGESEIS----IRLINILDKLHITLD--EFLILHDEDY........ 70
7 -5.790IDP00413 gene: yscK; type III secretion apparatus component YPCD1.60 [Yersinia pestis CO92]  ali follow..  14  1MMENYITSFQLRFCPAAYLH-LPYLPQWRDSAHLNAALLDEFSLDTDYEEPHGLGALPLQPQS-----QLELLLCRLGLVLHGEAIRRCVLASPLQQLLTLVNQETLQIIVQHELLIGPLPTEIESRTMIQSGLA...................... 149
8 -5.660IDP90516 gene: oorD; 2-oxoglutarate-acceptor oxidoreductase subunit OorD [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0535 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  11  4............TAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLGQMIEVVHPESC............................................................................................. 55
9 -5.650IDP91854 transcriptional regulator [Streptococcus pneumoniae TIGR4] SP_0141 [Streptococcus pneumoniae TIGR4]  ali follow..  6  1........................................................................MIERMELGEFYKELRLARKLKQSDVACEGLTASQLSKFELGQSMLSADK---LILAIQGINVTFD--EFGHKLNNYQ........ 72
10 -5.570IDP91856 MutR [Streptococcus pneumoniae Hungary19A-6] SPH_0253 [Streptococcus pneumoniae Hungary19A-6]  ali follow..  6  1........................................................................MIEKMELGEFYKELRLARKLKQSDVACAGLTASQLSKFELGQSMLSADK---LILAIQGINVTFD--EFGHKLNNYQ........ 72
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.