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Query: PB023890 Q7MUU3_PORGI/1-263 PB023890; Pfam-B_23890;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MDPPVCSPWGRFGCYLLLFACPIIFASIMKKEFIGRTAKSLSLALAIFSGCIFGSVLPAWSQEIVAGELERCFLAMPESVLPIVTMEERNDLCRRAGHLSGFTHTASLESSLGGTVTFLLNRNFIRIQTSTVGEVFMRILPFSDSSSVICVVTTVLHPVADSRIDFYTTEWKPLKTDRFWQQPRIEDFFLPHTDRQSYAYQAIYASLTPSYMQVSLSEESDTLSIRQTVTETLAEEEKPLAAIFLSPEPLVYRWQSGRFVRQVLast
1 -7.660IDP90516 gene: oorD; 2-oxoglutarate-acceptor oxidoreductase subunit OorD [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0535 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  19  13VDEHRCK-----ACNICVSYCPAGVLAMRDD........................................................................................................................................................................................................................................ 38
2 -7.620IDP01812 ferredoxin [Francisella tularensis subsp. tularensis SCHU S4] FTT1764c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  33  35INPDEC-----IDCALCEPECPV................................................................................................................................................................................................................................................ 52
3 -6.760IDP00452 electron transport complex protein RnfB YPO2245 [Yersinia pestis CO92]  ali follow..  22  142VLSDLCT-----GCDLCVAPCPTDCIEMIPVA....................................................................................................................................................................................................................................... 168
4 -6.600IDP91439 ferredoxin [Vibrio vulnificus CMCP6] VV1_0471 [Vibrio vulnificus CMCP6]  ali follow..  22  4LITDKC-----INCDMCDPECPNGAISMGDKIFEID................................................................................................................................................................................................................................... 34
5 -6.550IDP95373 set238a-008 [Vibrio cholerae]  ali follow..  10  1................MILEC---LRCGTKKKIVIKELAIRASKENKMKKMILLLSVLLLNSCSTNAEYKTISVTMPSFYPANVTQVYGVNDKENWTALLHGYLHTMRNSELKRIQERFTDYDGFGLSLLNTTMGVQIGTGTTHLPDTLYLY------VSLFDTKFYVTKYEPTSVKQLIATKTTYTRRDGAIVDSCYRAEFIFGLLPNGQAKVWLDGCGETIYLSYRKSSSFADVQQRAKDAGVELEPIPWKVNKSRYEIKT 269
6 -6.490IDP95274 lipid A biosynthesis lauroyl acyltransferase [Acinetobacter baumannii ATCC 17978] YP_001084285 [Acinetobacter baumannii ATCC 17978]  ali follow..  12  1...............MFLAYLPWAIQWRLA-KLFSKIAWTLLGSRRKTTLRNLGACFPEKTSEQIEAKAKSVFTDTMIGIFEALNAWYCPAWFKKRVHIEGLEHLNDNRDR-------------ILLLGTHSTLLDAGGAACTLFFDMDVVYRPQNNPFMDFLIHRSRARVEKLKNGHAIWYSPDQDFFFGIQAATVTAHRRLMDISNAVAIPLYFYRSGDNVLVEPKLENFPSECENKIIENQIRIAPTQYMWFHRRFKTR. 270
7 -6.380IDP00862 gene: ccmD; heme exporter protein C STM2251 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  22........WLAVAMTVAPLALLALHTVLQRRAILRGVAQQ............................................................................................................................................................................................................................... 53
8 -6.380IDP00891 gene: ccmD; heme exporter protein C STM3816 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  22........WLAVAMTVAPLALLALHTVLQRRAILRGVAQQ............................................................................................................................................................................................................................... 53
9 -6.300IDP02246 gene: rnfB; Iron-sulfur cluster-binding protein [Francisella tularensis subsp. tularensis SCHU S4] FTT0649c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  13  78IDESMC-----IGCEKCLLACPV--AIVGAKKLMHTIIEAECT------------------------GCELCVEPCPMDCISLVDLAADKQPNNLTNHAYTTQKNHYRDRYEYHKQRVSQTKAKQRDVYKNIATAQ----EIDKKAYIAASLAKFRNKKKSSP.................................................................................................... 206
10 -6.190IDP02074 gene: hybA; hydrogenase 2 protein HybA [Salmonella typhimurium LT2] STM3149 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  15  117.DPNVC-PVSATGCRYCMVACPYNVPKYDYNNPFGALHKCELCNQKGVERL-------------DKGGLPGCVEVCPAGAVIFGTREELMAEAK--------KRLALKPGSEYHYPRQTLKTDDTYLHTVPKYYPHLYGEKEGGGTQVLVLTGV............................................................................................................. 267

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.