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Query: PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSIFANLFKKQADADAKVVGNVEDFVSLTRVYFQSVIAVNLGITNIRFLPDVANFKRLFKVATQGGKLGLAEKSASRKMLMQDYGISESFFKEIDTSIKKNCRTQNDVQAYLFMYQGFSSDLMMLMGNLMQWKFRMPAIFKKALRSMTEKTVHDVCTKTVWKADDVHKTAAAVRQYKERLGFSEQWMSEYVYNIVLLAKKEPKHKDEEAKALast
1 -6.320IDP93818 AraC family transcription regulator [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007707 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  12  125......LLSASEQTDNVSINYLSQRYGVSAAYFRQLYRESFKATAKKKMMNVRMASAVGSILDVGLDAGYCSASHFTNDLKKELGLTPSEIRRLESILYES.............................................................................................................. 226
2 -6.140IDP04066 gene: mxiE; MxiE, similarities to transcriptional activators of the AraC family, function unknown [Shigella flexneri] CAC05819 [Shigella flexneri]  ali follow..  16  101..LVLYLLRTIEKEKEVRIKSLTEHYGVSEAYFRSLCRKALGAKVKEQLNTWRLVNGLLDVFLHNQTIGYASTSHFSNEIKTRLGFSARELSNITFLVKKINEKI.......................................................................................................... 210
3 -6.120IDP04057 50S ribosomal protein L6 [Bacillus anthracis str. Sterne] BAS0125 [Bacillus anthracis str. Sterne]  ali follow..  11  36....................................................RTFNADMLIKIEENTLTVERPSEQKEH-RALHGTTRALIGNMVEGVTEGFARGLELVGVGYRAQKQGDKLVLSVGYSHPVEMTPEAGLEVEVPAPTKIVIKGI------DKQRVGEFAANIRAVRAPEPYKGKGI----YEGEVVRRKEGKTAK..... 179
4 -5.320IDP04188 sensory box/GGDEF family protein [Vibrio cholerae O1 biovar eltor str. N16961] VCA0939 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  137IGVSTDITDIVELREQLYQLANTDSLTQLRRKLWADFRAAFARAK--ISIDIDNFKL------INDQFG--------------HDKGDEVLCFLAKLFQSVISD---------------HHFCGRVGG--EFIIVLENTHVETAFHLAEQIRQRFAEHPFFEQNEHIYLCAGVSSLHHG-DHDIADIYRRSDQALYKAKRNGRNR...... 312
5 -5.170IDP00968 putative alpha amylase STM1560 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  13  117...............EMHTGTFTPEGTFRAAIAKLPYLAELGVTVIEVMP----------VAQFGGERGWGYDGVLLYAPHSAYGTPDDFKAFIDAAHGYGLSVVLDIPAFFHKERAYDVDAVYIIEAPLYWEYHLDGLRFDAIDQIEDSSARHVLVE---EDSRNIISLHPRDQDGNAPLFTAEWNDDFHNAVHVFATGETQAYYNDFAD 345
6 -5.130IDP02630 gene: invF; invasion regulatory protein [Salmonella typhimurium LT2] STM2899 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  11  117.......YLLAQSTSGNTMRMLGEDYGVSYTHFRRLCSRALGGKAKSELRNWRMAQSLLNSVEGHENIGYSSPSHFSSEIKELIGVSPRKLSNIIQLADK............................................................................................................... 216
7 -5.100IDP00475 gene: livK; branched-chain amino acid-binding protein YPO3808 [Yersinia pestis CO92]  ali follow..  118...VIMITPAATNADLTTRGYKMIMRTTGLDSDQGPTAAKYIVETIKP--------KRIAVVHDKQQYGEGLARSVRDSLKEQGAVLFEGVTAGDKDFSTLVARLKKENVDFVYFGGYYPEMGQILRQAKQAGLTARGVGNSSLSNIAGEASEGMLVTLPKRYDQVPANQPIVDALKAKKLDPTGPFVWTTYAALQSLTTAMERTGSKEPA 324
8 -5.050IDP01970 gene: idi; isopentenyl-diphosphate delta-isomerase [Salmonella typhimurium LT2] STM3039 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  16  1..............................................................................MTEEHVVLLDEQDKPSGTLEKYAAHTLNTPLHLAFSCWLFNEDGQLLVTRRSLSKKAWPGVWTNSVHPQQGETTEE----------------AIIRRCRFELGVEITDLTPVYPHFSYRATDPNGIVENE... 116
9 -4.870IDP90518 hypothetical protein Cj1404 [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj1404 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  10  7...................GGSFDPPHNGHNSVVLEALEKLDIDKLIIMPT--------YINPFKQSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYN--PSKFYLLIGKLHLWH-DFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRD-TLNTNEVCEEIKDEVKKYYEKLQKN.......... 181
10 -4.860IDP02494 hypothetical protein GBAA0550 [Bacillus anthracis str. `Ames Ancestor`] GBAA0550 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  436LRSLKDGLDQHPSISNEDRERYMNFISLARKEYDEIAKKE--VQKAFVYSYEESAKTLMDNYLDNVEAYCNKSKLRDPLTGEEMSPDEKLMRSIEEQIGISENAKKA----------FREEILIRISAYAR---RLREAIQKKLFADLKDIVKITTSTKTPDENQLKKINDVVARLIDEHGYNSSSANELLRYVGSLLNR........... 631

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 2 2 3   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Slabinski L, Jaroszewski L, Rodrigues AP, Rychlewski L, Wilson IA, Lesley SA, Godzik A. The challenge of protein structure determination--lessons from structuralgenomics. Protein Sci. 2007 Nov;16(11):2472-82.