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Query: PB033130 gi|160880323|ref|YP_001559291.1| transglutaminase domain protein [Clostridium phytofermentans ISDg]gi|160428989|gb|ABX42552.1| transglutaminase domain protein [Clostridium phytofermentans ISDg], from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst PVCGAKVSLEILNYAEFASVTELYTDEKGCVSITIGLGDIHIRAVKDGFFAEAMGHVRTQEEITLILNDNLLSKDWVTDSWEMCEVEAPKDSVKYQFNLTREQQATNRSKLREAKLLRENRIESYYDEALAENVPDAKEILHLAKGNFMEIYRFLTVDGNNVDSNQDRLALLKTLKVKDYKDVTASVLEDHLKVRESSYKYRPVYKDNIAHEDSIVYKESIEFNDSCVYNDSIAYEYSFAMEYIVCPRIYLEELTAYLast
1 -7.060IDP01819 gene: csgC; putative autoagglutination protein [Salmonella typhimurium LT2] STM1145 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]  ali follow..  6  41.................VQILSVRDGVGGQSHTQQK-QTLSLPANQPIELSRLSVNISSEDSVKIIVT............................................................................................................................................................................................. 90
2 -6.290IDP92792 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG36647 [Vibrio cholerae O1 biovar El Tor]  ali follow..  13  12..ESITRTYSQISIEETRIVLDTPMESVNETVLSFANGSITVTEPKQGVSTMPQATTRSNKGLVLNVTTYATLSTLLSGISANAEIVKPTQQQVVKSSLGKETQEQTQQRIQRALAAKQSKQANIYDELNKARAKDAQPLMDIVKAKQTELIKCASAKAQTAEWGELVKQLSGKKFTPEAFDVFKEVLTI................................................................... 221
3 -6.270IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  14  749VLSGAK--FNLEDAFGNIVVKDLVSDEDGIIQSSKNPGTYYLVEIMAPR-GYEK----LKDKIKVEIGNKDIGRIVDIGNIENIRQENPPVNPPAPPNTDEPIVN........................................................................................................................................................ 847
4 -6.180IDP92777 hypothetical protein [Vibrio cholerae O1 biovar El Tor] AGG09410 [Vibrio cholerae O1 biovar El Tor]  ali follow..  13  12..ESITRTYSQISIEETRIVLDTPMESVNETVLSFANGSITVTEPKQGVSTMPQATTRSNKGLVLNVTTYATLSTLLSGISANAEIVKPTQQQVVKSSLGKETQEQTQQRIQRALAAKQSKQANIYDELNKARAKDAQPLMDIVKAKQTELIKCASAKAQTAEWGELVKQLSGKKFTPEAFDAFREVLTI................................................................... 221
5 -6.150IDP05700 hypothetical protein lmo2467 [Listeria monocytogenes EGD-e] lmo2467 [Listeria monocytogenes EGD-e]  ali follow..  8  299PTAPKSLMSHGQTDTTIALCWQASTDNVEVKNYEIYRNNTKIATSTKTMFEDTKLASNTSYNYKVYAVDTSGNRSLVSNEITIKTKTLDPLNTWKSDQIYNAGDQVYYNGVA................................................................................................................................................. 410
6 -6.040IDP05538 putative collagen-binding surface protein [Clostridium difficile 630] CD3392 [Peptoclostridium difficile 630]  ali follow..  17  221SIAGAT--YGVFSDKD---LATLTTDKNGNTDVIVKAGTVYIKELSAPA-GYKVLTIKAGETATLKVSDT........................................................................................................................................................................................... 295
7 -5.910IDP95377 set238a-014 [Vibrio cholerae]  ali follow..  13  16PLAIDKIQLIPVRYGVASPPFETKSKPIGVRLLRDGW--LYILMKQEEAWLLHEYRTEGGQITTLLWQDSDVDKDVRTTTVGDANLVFKKTDILYACYSEVQWTARKCSQVIKNDKDRKRFMQRV-GGENLLTPKQASSLIAECAEKVVSFTELSAKVLRQYRNGHFYLILNDDIG-RDLASFQALVATSL.................................................................. 244
8 -5.790IDP92553 gene: fadR; fatty acid metabolism transcriptional regulator FadR [Vibrio vulnificus CMCP6] VV1_2233 [Vibrio vulnificus CMCP6]  ali follow..  10  2VIKAKSPAGFAEKYGRFPPGSILPAEREGWLTIQHGKPTKVLDVDNATNIVEDLLAARSPIFMRYAFKVNKENSRTIKTVIDSCEQLVAAESWDAFLSSSPYADKIQQNVKEDNEKDEAKRQEILIAKTFNFYDYMLFQRLAFHSGNDRVGSFYFSNPASRELALKFYRQLLLTCESGQ--EQLPALIRQYGIESAM............................................................ 261
9 -5.650IDP05125 putative lipoprotein [Bacillus anthracis str. Ames] BA_4310 [Bacillus anthracis str. Ames]  ali follow..  18  181ALTGAEVQLEIWKDGV-HEFIPAKEGNKGEYETKHGSYKVKVHVKKGEL--------HEHKEETVEVK............................................................................................................................................................................................. 246
10 -5.480IDP00754 gene: spa; immunoglobulin G binding protein A precursor SACOL0095 [Staphylococcus aureus subsp. aureus COL]  ali follow..  11  1...........MKKKNIYSIRKLGV---GIASVTLG--TLLISGGVTPAANAAQHDEAQQNAFYQVLNMPNLNADQRNGFIQSLKDDPSQSANVLGEAQKNKDQQSAFYEILNMPNLNEAQRNGFIQSLKDDPSQSTNVLGEAKKLNESQAPKADNNFNKEQQNAFYEILNMPNLNEEQRNGFIQSLKDD................................................................... 190
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Lukasz Jaroszewski, Zhanwen Li, S. Sri Krishna, Constantina Bakolitsa, John Wooley, Ashley M. Deacon, Ian A. Wilson, Adam Godzik, Exploration of Uncharted Regions of the Protein Universe. Plos Biology. 2009 Sep. 7(9):e1000205