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current user: public |
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Query: PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF, from HGM_OVER |
. 10 . 20 . 30 . 40 . 50 . 60 . 70 . 80 . 90 . 100 . 110 . 120 . 130 . 140 . 150 . 160 . 170 . 180 . | |||||||
# | Score | Template | Links and tools | %id | First | MRKELHNTKVTVRLRKSAYRNEWYLYIESYPVYTAGKSEPQRVREYLNRIVTTVVWDKTRTARTTSSSKSYKPKRDLNGVIQCKSEVDQEACIYADEVRKLRQREYDNADLYSDADTAQAEQKERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAP | Last |
1 | -7.990 | IDP93810 gene: int; putative phage integrase [Yersinia enterocolitica subsp. enterocolitica 8081] CAL12417 [Yersinia enterocolitica subsp. enterocolitica 8081] | ali follow.. | 15 | 1 | MRMIKYPTGVENHGGK---------------LRLWFIYKGVRVREALGVF-------------------------------DTPKNRKVAGELRASICFTIKTGTFDYAVQFPNSPNLAKFGQARKDMTLYELSNKWLSLKEMDLTINAFSRYKSFISVTTSIIGCNRLVSSITQEDILSLRRELLTG. | 142 |
2 | -5.090 | IDP05015 gene: fliE; flagellar hook-basal body protein FliE [Clostridium difficile 630] CD0247 [Peptoclostridium difficile 630] | ali follow.. | 12 | 28 | .........................................................................................................................NNKEEKKNFEDVIIDTIDKVNFQQVTADDMKEKSMHEVMLIGQEAQLSMQEVRNKIHDAYQEMNK... | 102 |
3 | -4.980 | IDP90117 virokine protein [Monkeypox virus] MPXV_ZAI1979_005_027 [Monkeypox virus] | ali follow.. | 9 | 1 | .....................................................................................................................................MRTLLIRYILWRNDGDPSYYNDDFKKLILF--DELVDDDDVCTLIKNMRMTLSDGP | 54 |
4 | -4.840 | IDP01827 gene: fliE; flagellar hook-basal body protein FliE [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0526c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819] | ali follow.. | 7 | 21 | .........................................................................................................................NSTGIGDEFAKMLKNEINDLNKAQESGEAAMTDDLHQAAIAITKAESSMKEVRNKAISAYKEITR... | 95 |
5 | -4.750 | IDP95391 set238a-028 [Vibrio cholerae] | ali follow.. | 10 | 43 | .............................................................................NKNEESDAVLNKSYNDLKKLVMGSPYDDETKGVYWSN---------VKSQKNWIQMRDSQCLAKGVFFENGTDLQRIEIKKCLFLSTEIRVL--------LNEEILFIKNLP | 139 |
6 | -4.700 | IDP90396 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_552 [Chlamydia trachomatis D/UW-3/CX] | ali follow.. | 11 | 49 | .........................................................................................................................TSHNKKERYYHFLKHVSHALKRPEIWNDLQNLLLILMQFEQFANQEVRYEEILSQIIEKRIHFLLSE. | 118 |
7 | -4.680 | IDP93928 virulence associated protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007710 [Yersinia enterocolitica subsp. enterocolitica 8081] | ali follow.. | 12 | 47 | ......................................................................................................................................KAALINGADTIDVSNPSELLQFQSRMNNYNHAINFIATLTHKGASAIDS-VLKAP | 100 |
8 | -4.590 | IDP90177 gene: CPXV024 CDS; CPXV024 protein AAM13471.1 [Cowpox virus (Brighton Red)] | ali follow.. | 11 | 62 | ............................................................................................................................DEATKFIEHLGDGIKEDETVRTTDG-----------ITTLRKVLHVTDTNKFAHYRFTCVLTTI. | 115 |
9 | -4.580 | IDP90109 interleukin-18-binding protein [Monkeypox virus] MPXV_ZAI1979_005_014 [Monkeypox virus] | ali follow.. | 6 | 57 | ..............................................................................................................................NDMKSDEDTKFIEHLGDGIKEDETVRTTD-----ITTLRKVLHVTDTNKFAHYRFTCVLITL. | 115 |
10 | -4.540 | IDP95389 set238a-026 [Vibrio cholerae] | ali follow.. | 10 | 39 | .............................................................................NKNEESDAVLNKSYNDLKKLVMGSPYDDETKGVYWSN---------VKSQKNWIQMRDSQCLAKGVFFENGTDLQRIEIKKCLFLSTEIRVL--------LNEEILFIKNLP | 135 |
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9. Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018. Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40. |