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Query: PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKELHNTKVTVRLRKSAYRNEWYLYIESYPVYTAGKSEPQRVREYLNRIVTTVVWDKTRTARTTSSSKSYKPKRDLNGVIQCKSEVDQEACIYADEVRKLRQREYDNADLYSDADTAQAEQKERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDNAFAEEYKRFLLTAPLast
1 -7.990IDP93810 gene: int; putative phage integrase [Yersinia enterocolitica subsp. enterocolitica 8081] CAL12417 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  15  1MRMIKYPTGVENHGGK---------------LRLWFIYKGVRVREALGVF-------------------------------DTPKNRKVAGELRASICFTIKTGTFDYAVQFPNSPNLAKFGQARKDMTLYELSNKWLSLKEMDLTINAFSRYKSFISVTTSIIGCNRLVSSITQEDILSLRRELLTG. 142
2 -5.090IDP05015 gene: fliE; flagellar hook-basal body protein FliE [Clostridium difficile 630] CD0247 [Peptoclostridium difficile 630]  ali follow..  12  28.........................................................................................................................NNKEEKKNFEDVIIDTIDKVNFQQVTADDMKEKSMHEVMLIGQEAQLSMQEVRNKIHDAYQEMNK... 102
3 -4.980IDP90117 virokine protein [Monkeypox virus] MPXV_ZAI1979_005_027 [Monkeypox virus]  ali follow..  9  1.....................................................................................................................................MRTLLIRYILWRNDGDPSYYNDDFKKLILF--DELVDDDDVCTLIKNMRMTLSDGP 54
4 -4.840IDP01827 gene: fliE; flagellar hook-basal body protein FliE [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0526c [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  7  21.........................................................................................................................NSTGIGDEFAKMLKNEINDLNKAQESGEAAMTDDLHQAAIAITKAESSMKEVRNKAISAYKEITR... 95
5 -4.750IDP95391 set238a-028 [Vibrio cholerae]  ali follow..  10  43.............................................................................NKNEESDAVLNKSYNDLKKLVMGSPYDDETKGVYWSN---------VKSQKNWIQMRDSQCLAKGVFFENGTDLQRIEIKKCLFLSTEIRVL--------LNEEILFIKNLP 139
6 -4.700IDP90396 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_552 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  11  49.........................................................................................................................TSHNKKERYYHFLKHVSHALKRPEIWNDLQNLLLILMQFEQFANQEVRYEEILSQIIEKRIHFLLSE. 118
7 -4.680IDP93928 virulence associated protein [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007710 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  12  47......................................................................................................................................KAALINGADTIDVSNPSELLQFQSRMNNYNHAINFIATLTHKGASAIDS-VLKAP 100
8 -4.590IDP90177 gene: CPXV024 CDS; CPXV024 protein AAM13471.1 [Cowpox virus (Brighton Red)]  ali follow..  11  62............................................................................................................................DEATKFIEHLGDGIKEDETVRTTDG-----------ITTLRKVLHVTDTNKFAHYRFTCVLTTI. 115
9 -4.580IDP90109 interleukin-18-binding protein [Monkeypox virus] MPXV_ZAI1979_005_014 [Monkeypox virus]  ali follow..  6  57..............................................................................................................................NDMKSDEDTKFIEHLGDGIKEDETVRTTD-----ITTLRKVLHVTDTNKFAHYRFTCVLITL. 115
10 -4.540IDP95389 set238a-026 [Vibrio cholerae]  ali follow..  10  39.............................................................................NKNEESDAVLNKSYNDLKKLVMGSPYDDETKGVYWSN---------VKSQKNWIQMRDSQCLAKGVFFENGTDLQRIEIKKCLFLSTEIRVL--------LNEEILFIKNLP 135
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.