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Query: PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSNIEQAYRGYGFAGRGQKNGCTVYQLKGEGGSGEMVCYDIAPGIQMSFNQLTMDSTFQSIAPVKKFLQIDYCIEGCYEVEYQNGTVSFLGEGDLCVTDLSRQVFVSSRLPLRKYRGVTLFLEVEKAQHTLSAGFPQAEINLAGIVNELCGKEQSLLVKSREDVERIFGKLSEVDERIQAPYYWIKTMELLast
1 -20.200IDP93895 transcriptional regulator YbtA [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001006814 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  7  1...MTESPQTQSEISINQLVVGKPANDGNIPAQCELLRCSLQEGMDILLWRGHFRPETLQLHDDLGRINFSCILEGTSRFAIQGRTDWELARNRHYITHTPDCR--GSASYCGRFESITLSFSPETLALWVPDISAVIKNKIDSHCCCLQQRCNAETHLTAQALRHLMRMHGGFSHEPSTLWLQGQSLVM 192
2 -7.890IDP04274 gene: virF; transcriptional regulator [Yersinia pestis CO92] YPCD1.49 [Yersinia pestis CO92]  ali follow..  11  2..........................................ASLEIIKLEWVTPIFKVVEHSQD---GLYILLQGQISWQS-SGQTYDLDEGNMLFLRRGSYAVRCG--TKEPCQLLWIPLP----GSFLSTFLHRFGSLLSEIGRDNSTPKPLLIFNISPILSQSIQNLCAILERSDSVLTQLRIEEL 141
3 -6.260IDP91485 transcriptional regulator ExsA [Vibrio parahaemolyticus RIMD 2210633] VP1699 [Vibrio parahaemolyticus RIMD 2210633]  ali follow..  9  35.................................................................DQSHIVVVHNGQLRVQT-GDCTIDVVAGSG-VFLSQGDYLLEYSPQGGNYHSSIIEFDNELVSQLLQKHSDLLMTL-----KVDKLNSGLFSFGLNILIEQVLSGMKTLEQSYPDAIMRLKYEEM 154
4 -5.280IDP04720 hypothetical protein [Yersinia pestis CO92] YPO1174 [Yersinia pestis CO92]  ali follow..  8  11.........................NIHSAGFNNSNSIQKYTGAVSSISDDLRINNEKCKSDIGT--------ISGDIKINRHSAVYGNVNSGDITVKNSIVDKDITTVSGDVNAVNSTIGKNIKTVSGSIEVEQSTVSGNLETTSGGIDIDTTKINGNVHTTSGSI....................... 146
5 -4.480IDP91753 TSST_STAAU [Staphylococcus aureus]  ali follow..  4  164............................................LAISTLDFEIRHQLTQ---IHGLYRSSDKTGGYWKITMNDGSTYQSD-----LSKKFEYNTEKPPINIDEIKTIEAEIN................................................................... 234
6 -4.460IDP95179 outer membrane porin HofQ [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002921604 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  7  22..................NDKPVSLVIDDAPVAQVLQALAEMNHKNLVVAPDVSGTLSLRLQK-SQALRAVADSAG-LSLQQQGTVIYAHTQAWQKANQAQREAEQEKRLQNLPLQAESVTLHFADAEELAKSGGKLLSARGHLMADK--RTNRLLIRDDARHLPALKAWAQEMDLPVGQVELAAHIVSM 192
7 -4.420IDP02266 gene: flgE; flagellar hook protein [Campylobacter jejuni subsp. jejuni NCTC 11168] Cj0043 [Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]  ali follow..  7  19IDITANNIANVNTTGFKYSDAQFKDIFYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQ---KGFFGVLGADGNAYYTRNGSFRR............................................................................................. 113
8 -4.360IDP93856 cobalt-precorrin-2 C(20)-methyltransferase [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001006905 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  10  10..............................VGPGTVRAARLIAKLDVLYASLALSIVREYLSPNTEIRTCHFVAQGRQVGFITLGDAMLFSTWVFLLERIGRPDWLEIVPGVTSFAAIASRAALPLAMEQQSLAVMSCTAPEAELERALRDHDCVVLMKVYGRFAQIQALLGRLNLFPHALLMSEASLP. 204
9 -4.350IDP04420 gene: sdhB-1; l-serine dehydratase, iron-sulfur-dependent, beta subunit [Bacillus anthracis str. `Ames Ancestor`] GBAA3308 [Bacillus anthracis str. `Ames Ancestor`]  ali follow..  12  65............................AETHKGHGTDFAIIAGI-LGFAADDSKVPDAIKIAESKGIDITFIEKNTADVYVEDDSRISVGGGLIEVKHVEIDGFSLE--LQGPLPVVIAISERADFEFVLRRIFKQYDVEINNFHSLKDKTKYLYAFALDSLLGNAQKELGNLSNIANLIIL....... 232
10 -4.220IDP00769 superantigen-like protein SACOL0472 [Staphylococcus aureus subsp. aureus COL]  ali follow..  7  240............................................ISLKELDFKLRKQLIEKNNLYGNVG-----SGKIVIKMKNGGKYTFE-----LHKKLQENRMADVINSEQIKNIEVNLK................................................................... 308
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 3 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Grynberg M, Erlandsen H, Godzik A. HEPN: a common domain in bacterial drug resistance and human neurodegenerative proteins. Trends Biochem Sci. 2003 May;28(5):224-6. Review.