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Query: PB039305 _Gut.Meta.Jp.0057508_ gi|162726131|dbj|BAAY01002830.1||2 (- 1092:1581~0 complete), from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst SVLDGFEAVGEKTTTNKMTMTVMESSVRFSKGVTEALGCPAYVKLLVNDKQKKIAVQACDAXDENAIKFCKTKRSKADGVDSDAAGKASSVTVRTTDVLVAVQKYFTFPPVADDQIAYFAMDGESYPDEKVVIFAVADASKGVSGKRGPRKLast
1 -3.900IDP04074 50S ribosomal protein L20 [Bacillus anthracis str. Sterne] BAS4469 [Bacillus anthracis str. Sterne]  ali follow..  8  82....................GLKNAGIEVNRKMLADLADEKAFAELATVAKNNI................................................................................................. 117
2 -3.880IDP91042 AdeR [Acinetobacter baumannii] ACB0002 [Acinetobacter baumannii]  ali follow..  14  69..LNGWEVLNKRQKAQTPVIMLTALDQDIDKVMALRIGADDFVVKPFNPNEVIARVQAVLRRTQFANKATNKNDTDTHSVYIHSENKKILLNLTLTEYKIISFMIDQPHKVFTRGELMNHCMNDSDALERTVDSHVSKLRKKLEEQGIFQ. 225
3 -3.830IDP04024 DNA-binding response regulator YycF [Bacillus anthracis str. Sterne] BAS5319 [Bacillus anthracis str. Sterne]  ali follow..  17  60..KDGLEVCRERKSSEMPIIMLTAKDSEIDKVLGLELGADDYVTKPFSTRELLARVKANLRRHQQGGAAEKEENTEMVIGPIVINPNAYSVTKREENI..................................................... 156
4 -3.730IDP05402 gene: comGD; comG operon protein 4 [Bacillus anthracis str. Ames] BA_4463 [Bacillus anthracis str. Ames]  ali follow..  8  94........IQLDLNTFPNPMTYNPSGNINRGGTILLSYRSYKYEIVFQLGRGRFTYREMSKRVSDG..................................................................................... 151
5 -3.590IDP02540 gene: shaE; monovalent cation/proton antiporter subunit, putative [Coxiella burnetii RSA 493] CBU_1584 [Coxiella burnetii RSA 493]  ali follow..  19  54.............CRTPVEITLFANIISLT---------PGTLTLDISEDQKTLYVHAMFIDDVDQLK................................................................................... 99
6 -3.550IDP92626 gene: cpxR; DNA-binding response regulator in two-component regulatory system with CpxA [Escherichia coli str. K-12 substr. MG1655] b3912 [Escherichia coli str. K-12 substr. MG1655]  ali follow..  10  57..KNGIDTLKARQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRSHWSEQQQNNDNGSP.......................................................................... 132
7 -3.490IDP91043 gene: vanRG; response regulator [Enterococcus faecalis] EFE0003 [Enterococcus faecalis]  ali follow..  14  59..VDGFHICQKRERYFYPIIMLTAKVEDADKIMGLTIGADDYITKPFNPLEVAARVKT............................................................................................. 115
8 -3.470IDP90219 gene: m008L; m008L, m8 MYXV_gp011 [Myxoma virus (strain Lausanne)]  ali follow..  11  2.MSYPLYKLFLKGKLCDVEIVAEGKSIRAHRLVLSAYS--KYFYNLFEKNVDVIDLEADYKTVFDVIYYMYTES----------------IELHKGNTESIFSLVHYLQIKPLIKKCIYEFNSIVNEENCIRLFKFAELYDLSELKRRARW 138
9 -3.410IDP02446 hypothetical protein lmo0287 [Listeria monocytogenes EGD-e] lmo0287 [Listeria monocytogenes EGD-e]  ali follow..  21  60..RDGIEVCRERKKYDMPIIMVTAKDSEIDKVIGLELGADDYVTKPFSNRELIARVKA............................................................................................. 116
10 -3.400IDP95471 hypothetical protein [Listeria monocytogenes 10403S] YP_005962623 [Listeria monocytogenes 10403S]  ali follow..  11  57..MDGMTICRKREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPFSPLTLMARIKAVTRRKNSA..................................................................................... 121
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 4   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Zhang Y, Stec B, Godzik A. Between order and disorder in protein structures: analysis of "dual personality" fragments in proteins. Structure. 2007 Sep;15(9):1141-7.