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Query: PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;, from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MGTIVYLSIRLACACYILYKVCGQKKKIREICDLLYTKLPPVKEKELENVLSEPGGESGIMGSTCFVYLDEDAGKSVAPYMSQPLETAADFIGEEEDVAEEEVECKLPLEEMRMLKEEQEELDGTYPAVDAVSRVVTPDDLDNAGNVLFKLNDADKDEEKSLRAALTLHTIRETDLFEIFSSQVENKNVIDSLMGKYLDGNGNPLSVRKTKSVVPVSDGWKQYLast
1 -8.140IDP05587 gene: sleB; spore cortex-lytic enzyme prepeptide [Bacillus anthracis str. Ames] BA_2748 [Bacillus anthracis str. Ames]  ali follow..  8  1MRQKAIFKIAVLLAFIGLSLMVSSIQLKNVEAFSNQVIQRGASGEDVIELQSRLKYNGFYTGKVDGVFGWGTYWALRNFQEKFGLPVDGLAGAKTKQMLVKATKYDKSTANKGNSGGTAQENKPSQNKGTNVPNGYSQNDIQLMANAVYGESRGEPYLGQVAVAAVILNRVTSASFPNTVSGVIFEPRAFTAVADGQIYLTPNETAKKAVLD........... 212
2 -7.100IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  14  1MKKALLISLIMILSMVVS-------------TVSYASELGENSQIQSGSTNSSTGEEKESDNKKPEQTPEKDKATDNKKPEQTPEEEKPTDNKKPEQTPEEDTDNKKPEQTPEGEKPIDNKKPEQIPEEDKSTDNKKSEQALEDEKPLDNKNTEKTPEEDNLLEDENLLKVLEEEL............................................... 173
3 -6.670IDP06438 gene: G8L; G8L [Monkeypox virus Zaire-96-I-16] NP_536504 [Monkeypox virus Zaire-96-I-16]  ali follow..  8  112.KPTILATLNTLITLILSNKLLYAAEMVEYLENQIDSSNKSMSQELAELLEMK-----ALINLVQYRILPMIIGEPIIVAGFSGKEPISDYSAEVERLMELPVKTDIVNTTYDFLARK-----DTSNNIAEYIAGLKIEENEKVEKYLPEVISTIANSNIIKNKKSIFPANINDKQIMECSRMLDTSEKTDGAVTSPLTGNNTITTFIPISASDMQKFTILEY 332
4 -6.470IDP91521 C2 domain-containing protein [Toxoplasma gondii ME49] TGME49_040910 [Toxoplasma gondii ME49]  ali follow..  6 1856....................................VKAAYRRLEEENTRLAATRRRDDKLQRQVEAERERAVELLKEATRRAKEEKDLIARQPPPARDWSDTTPQIFVNSQAACAPFADSGRDEGGRDEWYEVSDACSRRAESSNESRTTAGAKLRQQQLDLAGRT........................................................ 1990
5 -6.180IDP06510 WxL domain surface protein [Enterococcus faecium DO] AFK58238 [Enterococcus faecium DO]  ali follow..  9  6.........................................................KKLIASILFVFP--VTSVFADVEKTNESTQSENQSFDKTTFSEESITSETTESQSEASTNKRQEENKTSETSEVAEQTSDSSEAALARAVSADGYSEAATTEELAQLLA--ESVTKIRLIQPLTLDRELEIKRDIVID............................ 143
6 -5.550IDP90311 hypothetical protein [Chlamydia trachomatis D/UW-3/CX] CT_734 [Chlamydia trachomatis D/UW-3/CX]  ali follow..  10  71...................................................................................................................KKPKEKTEPVLPNFKSYADPMTDSERKDLSFVVSAAADKSSAQGEIKGALSRIREIHPLALLQALAEDPALIAGMKKMQGRDWKVFSQAASLGAFSVADVAAF..... 188
7 -5.470IDP91678 H5_VACCW [Vaccinia virus WR]  ali follow..  10  64.....................................................................KRSTKKEEVEEEVVIEEYHQTTEKNSPSPGVSDIVESVAAVELDDSDGDDEPMVQVEAGKVNHSARSDLSDLKVATDNIVKDLKKIITR--ISAVSTVLEDVQAAGISRQFTSMTKAITTLSDLV............................. 186
8 -5.300IDP00568 gene: hslV; ATP-dependent protease peptidase subunit YPO0106 [Yersinia pestis CO92]  ali follow..  11  6......................................................................................................................................SVRRDG------VIGGDGQVTLGNTVMKGNAKKVRRLYNNKVIAGFAGGTADAFTLFELFERKLEMHQGHLTKA............... 75
9 -5.260IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  10  3.....................................NRDNKKAITKKGMISNRLNKFSIVGTASILVGNQEAKAAENTSTENAKQDDATTSDNKEVVSETENNSTTENNSTNPIKKETNTDSQPEAKKESTSSSTQKQQNNVTATTETKPQNIEKENVKPSTDKTATEDTSVILEEKKAPNNTNNDVTTKPSTSEPSTSEIQTKPTTPQESTNIEN...... 194
10 -5.130IDP02430 hypothetical protein FTT1151c [Francisella tularensis subsp. tularensis SCHU S4] FTT1151c [Francisella tularensis subsp. tularensis SCHU S4]  ali follow..  15  22.....................................................................................................................................RGML--ELDIILAPYLNNCYMHEDLANKKLFVEFL-TSEDSDMFDWLFKGVTPPQRYQQLIDKIIKEKKKFNQTK............... 93
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Rychlewski L, Ye Y, Jaroszewski L, Godzik A. Integrated web service for improving alignment quality based on segments comparison. BMC Bioinformatics. 2004 Jul 22;5(1):98.