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Query: PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492], from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKKTIFYSLFSALFMLTSCSMFEIDNYEEPSETIWGEVVDEATGKRVLTDQGSEGIRVRLTELSWGDNVQHNPDFYCMMDGTFQNTKIFKGEYNVRIDGPFIPLVRENTDGTLLHDGSVNTEISGTTKVKFEVQPFLNVEFVGNPQVSNGVIKAQVRVTRGVSDEVFREKIQPMGNWKDEYLNVTDIQFFVSYSNTVGYRARDERWSSSINYEGKSFEGLLGKEVTIQSNGNVPSGRKVFVRAAARINYDTPVGSGTRRWNYSEPMELast
1 -14.100IDP93899 hypothetical protein YE3559 [Yersinia enterocolitica subsp. enterocolitica 8081] YP_001007717 [Yersinia enterocolitica subsp. enterocolitica 8081]  ali follow..  11  1MKSRFYYLILILSLVLSGCTLPTDNSHNYNGGYIQGNILSNSKTIP-----ENVKITLSLSQNKASGEKEYMLEYSFMTKTKLPNELSLSSPLNISVR------VEKEGKLIMMSDKLTPLLRQSGEKLLLTVND.................................................................................................................................... 143
2 -13.800IDP05125 putative lipoprotein [Bacillus anthracis str. Ames] BA_4310 [Bacillus anthracis str. Ames]  ali follow..  13  1MKKLIMTLFIAMLALAGCNTNKEEPKKEQKLEAVKVAVQTNKPGEKTEVQALVTQ-DVKFEVWKAGDEKHEMLEGKHKGKGVYAVEKTFEGVYHIIAHREMHVMPEVKVAVGNAKVEDAKKENSDHGAGHGDHKSDTMIHLMAGDIKANAESTMKVHLKQ........................................................................................................... 177
3 -13.400IDP05615 putative lipoprotein [Bacillus anthracis str. Ames] BA_5522 [Bacillus anthracis str. Ames]  ali follow..  14  1MFKKVFVPLFAATVLISGCNKEVVKESPKTPLKIDEVKINTVNGKTLMVDVKAKGEKLT-YAYYIYKGEEIVEKIWYKPENSLKYEVKEPGKYKVKAY-----AKDANKKIDSVYTNEVTIE................................................................................................................................................. 125
4 -13.300IDP05607 putative lipoprotein [Bacillus anthracis str. Ames] BA_4862 [Bacillus anthracis str. Ames]  ali follow..  13  5MKFSMFMFLGVVLIILAACTTKSVEQVAVKEVPKEGYIILRNETVFLADDKTFETKIELQNYIEQQMNQDYPSDIVLIFKDKDAYDQLKTGD-KIKV.......................................................................................................................................................................... 100
5 -12.800IDP01305 lipoprotein-related protein VC1064 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  17  1MKKVLLVISILFGSVLVGCQMNESNKTQDKIQSITGSVAYRER--ALPDNAV---VTVYLQDVSLADAPATVIKQNFITNGAYDSRKIKASRYSVSAR-----EVDGKLRFITDTHYGVITDPEATKHVPMMLIG.................................................................................................................................... 139
6 -12.300IDP05407 conserved domain protein [Bacillus anthracis str. Ames] BA_1485 [Bacillus anthracis str. Ames]  ali follow..  1MKNLVIGLVALLFVVVGGFYIKKYQE-GNEKADIVFQLLNN-KSSEVRG----VNDQIRAVIVDGQLKHVQQTKPTFAGNGSYKVSSKIAEGYTIFLKIGEYEVSLLFGALHPNEPVTLTFQFQAKKGEKLKLHAER.................................................................................................................................. 190
7 -12.200IDP92699 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus USA300_TCH1516] YP_001574462 [Staphylococcus aureus subsp. aureus USA300_TCH1516]  ali follow..  11  719.............................PKYNLGDYVWEDTNKDGIQNEPGIKDVKVTLKD----STGKVIGTTTTDASGKYKFTDLDNGNYTVEFETPGYTPTVKNTTADDKDSNGLTTTGVIKDADNMTLDPKYSLGDYVWYDSNKDGKQVTVTLQNEKGEVIGTTKT................................................................................................ 874
8 -11.900IDP92687 Ser-Asp rich fibrinogen/bone sialoprotein-binding protein SdrE [Staphylococcus aureus subsp. aureus str. Newman] YP_001331559 [Staphylococcus aureus subsp. aureus str. Newman]  ali follow..  13  717...........................KEPKYNLGDYVWEDTNKDGIQNEPGIKDVKVTLKD----STGKVIGTTTTDASGKYKFTDLDNGNYTVEFETPGYTPTVKNTTADDKDSNGLTTTGNMTLDRGFYKTPKYSLGDYVWYDSNKDGKQVTVTLQNEKGEVIGTTKT................................................................................................ 874
9 -11.600IDP05448 hypothetical protein lmo2594 [Listeria monocytogenes EGD-e] lmo2594 [Listeria monocytogenes EGD-e]  ali follow..  14  1MKKTSIIFIFCTLLFVTACST---SENQTQATEATGTIEQVETDAILINNFKEKKDK---YNPEAAIRFDIVDKYYDETGNKIKITDLNKND-DVKIILTKDFPIQETSPAQIDPKYVQKIILLNK............................................................................................................................................. 119
10 -11.600IDP05436 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo2085 [Listeria monocytogenes EGD-e]  ali follow..  411...........................AEKTGSITIFKQDEANKKGL------ANAVFDVKS----IDGTTLKKVTTNSKGYALAENLQPGTYVITEVTAGYEKSANEI--------RVTIPFNPQKTINITFSDNKIMVPLKPTPTKGST.................................................................................................................... 518
11 -11.000IDP05502 putative collagen-binding surface protein [Clostridium difficile 630] CD0386 [Peptoclostridium difficile 630]  ali follow..  11  212....................................SITDGNGNYSI------AGATYGVFADK--DCTKQLATLTTNENGNTDVVEVTTGTVYILSAPAGYKVDKTVYSLKVEAGKTATLKVSDTPKVLIELFKIDMETQKDNPQGNASLAGAEFTWKYYAGF....................................................................................................... 336
12 -10.900IDP05117 putative collagen-binding protein [Clostridium difficile 630] CD2831 [Peptoclostridium difficile 630]  ali follow..  14  731...........................TKQGYAFEAKKVDALDKNVL------SGAKFNLED---AFGNIVVKDLVSDEDGIIQSSVKNPGTYYLV---RGYEK----------LKDKIKVEIGNKDI........................................................................................................................................... 814
13 -10.600IDP05612 putative lipoprotein [Bacillus anthracis str. Ames] BA_5233 [Bacillus anthracis str. Ames]  ali follow..  14  1MLKTIKNTLLFFLCLVVLSGHGGSNSIDGKYKSFTGF-MDVKKGESWEDKTKQGTIKAYVLDSN-VNSGNSKNNIKVSKDDTYKVK--HGGEFEISWK......................................................................................................................................................................... 126
14 -10.500IDP05538 putative collagen-binding surface protein [Clostridium difficile 630] CD3392 [Peptoclostridium difficile 630]  ali follow..  11  212....................................SITDGNGNYSI------AGATYGVFSDK--DCTKQLATLTTDKNGNTDVIEVKAGTVYILSAPAGYKVDKTIYPLTIKAGETATLKVSDTTDTLVELFKIDMETQKDNPQGNASLAGAEFTW............................................................................................................. 330
15 -10.400IDP05445 hypothetical protein lmo0821 [Listeria monocytogenes EGD-e] lmo0821 [Listeria monocytogenes EGD-e]  ali follow..  11  1MKKIIFTVVLSLVLVLAGCADVTNTVKVDKKGEATISFD-------IDISSVAGIFASSYSDEVEAKLKEAGFTVDKKSNTSYHIEKKVDKNETTKSDMKDADIDIEKIWKKEVADVPFPKEILSQVDYTFILDPISSIGENNAKSVDGGKLTWDVPLDKKSE........................................................................................................ 178
16 -10.200IDP05077 hypothetical protein lmo1115 [Listeria monocytogenes EGD-e] lmo1115 [Listeria monocytogenes EGD-e]  ali follow..  10  736..............................NDLKKGTAKDVSTGELL------PNTGIRILD----EEKNTIAEGRTDDKGIYTFEKLPAGKYYFQEYDAGYQLDDTPMLFEITENEVVKCEMT-----NNKIPEKITSLPQTGDTTNITIFALGMLL............................................................................................................. 855
17 -10.100IDP05698 hypothetical protein lmo2186 [Listeria monocytogenes EGD-e] lmo2186 [Listeria monocytogenes EGD-e]  ali follow..  12  1MKKVLVFAAFIVLFSFSFLSTGLTAQAALKDGSVDYTVIQGDSDSAMANDYFDKPATVTV------------------NGGKSTVSLQVNHSKWITGLWVEGNAVSVTSKNASSDTRKVSFPVS---TLSNPVNAKIKVDIDDDDLNYHHEYQIKLRFDEGSAKA...................................................................................................... 147
18 -9.780IDP05010 putative lipoprotein [Bacillus anthracis str. Ames] BA_4934 [Bacillus anthracis str. Ames]  ali follow..  11  1MKKVLFVLLLTASILLIGCSTKKEKAGMNLEKAQKVEIESLTDSSEKKV---TDKKEIEKLFEVMKMDKWEMQSAPLDTPQGKTFKMYQEDTTKLSESSKDKKELHEIGTMTVYKDVPYVEVEMKNKKMSFKVP..................................................................................................................................... 134
19 -9.640IDP06530 surface protein [Enterococcus faecium DO] AFK59398 [Enterococcus faecium DO]  ali follow..  110..............................YGDFHFIKQDVNTQEKL------ADAEFSILRAK-TGSDWEEVKLISDSEGKFSIEGLKQGAYCLQETKAGYALPKNEFTVDDDPTTSDETTIDNQPKGILPSTGGMGII--VFILVGTALVGAVIYFKKRHQETEA.................................................................................................... 271
20 -9.580IDP01314 hemolysin VCA0594 [Vibrio cholerae O1 biovar El Tor str. N16961]  ali follow..  14  11MNKTALLLTVVGAVLLTGCARQENEYTVKEYTSMA---------NPASVYCVEQGGQLEMVT---------------ENEQRVTYCVTKDGE............................................................................................................................................................................... 78
21 -9.500IDP06539 gene: fms13; LPXTG family cell surface protein Fms13 [Enterococcus faecium DO] AFK58158 [Enterococcus faecium DO]  ali follow..  389........................PPEKVTTGGRKFEKYDASSSELL------KDARFELWNEDRSETSGQATEFVADGNGYFEVQGLDYGTYQMKETMAGYVLPTGEAAFTEFIISPGPERVPNMKRGSL---PATGGNGLLAFLLIGISLMI................................................................................................................. 550
22 -9.380IDP91037 gene: sdrD; Ser-Asp rich fibrinogen-binding, bone sialoprotein-binding protein [Staphylococcus aureus subsp. aureus Mu3] SAHV_0560 [Staphylococcus aureus subsp. aureus Mu3]  ali follow..  13  680.............................PKYNLGDYVWEDTNKNGIQDEKGISGVTVTLKD----ENGNVLKTVTTDADGKYKFTDLDNGNYKVEFTTPGYTPTTVTSGSDIEKDSNGLTTTNMTLDSGFYKTPKYNLGNYVWEDTNKDGKQVTVTLKNENGEVLQTTKTDKDGKYQFTGLENGTYKVEFETPSGYTPTQVGSGTDEGIDSNGTSTTGVIKDKDNDTIDSGFYKGDYVWEDTGVTVT-KTVTTDENGKYQFTDL.. 957
23 -9.360IDP95155 type 3 fimbrial protein mrkA precursor [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] YP_002921128 [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]  ali follow..  15  1MKKVLLSAAMATAFFGMTAAHAADTNVGGGQVNFFGKVTDVS---TVSVNGQGSDANVYLSPVTLTEVKAAAADTYLKPK-----------SFTIDVSN........................................................................................................................................................................ 86
24 -9.190IDP02471 hypothetical protein lmo0880 [Listeria monocytogenes EGD-e] lmo0880 [Listeria monocytogenes EGD-e]  ali follow..  13  1MKKRWLVFAIICLIITGFLSPKAEAATDYGSSFFTNVSLQNQNGEQATNFKENSKVRVAY---------------------DFVIQPVASGEMTL----------------------TIPDQLKLINYGGFPLM------------DSQGNTIANATIDQVTGTITLT---------TDYVNTHTDLSGSLFYNATFNSKNIQTDQVNPIAFPVKNTTQTVTPYISKVNSGGGTGSPTIVFKQGRMDDKDLSILHWTVTLNNA.... 202
25 -9.100IDP05452 collagen adhesion protein, C-terminal [Bacillus anthracis str. Sterne] BAS5207 [Bacillus anthracis str. Sterne]  ali follow..  13  706..............................TGSMELTKVDIDHNGTL------EGAIFNILD---QDGKVVREGLKTDGHGKLIVNDLKPGNYQLTKAPEGYQLDASPISFTIEKAQASPLQITVSNK........................................................................................................................................... 796

FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Shiryaev SA, Ratnikov BI, Chekanov AV, Sikora S, Rozanov DV, Godzik A,Wang J, Smith JW, Huang Z, Lindberg I, Samuel MA, Diamond MS, Strongin AY. Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase. Biochem J. 2006 Jan 15;393(Pt 2):503-11.