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Query: PB144506 _Gut.Meta.Jp.0101058_ gi|162866171|dbj|BABB01003836.1||1 (- 121:946~0 complete), from HGM_OVER

Results of FFAS03 search in CSGID
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MKTKLVAVIALIFCAFMAEASKVEGNGNIITKEISVDNYSEIELGGNIEYSGNNFWGNRSNKKFPVFKYTHGRSASLKITIDENLFPLLSIKSNNGRLAIRIQDGTRIKPTQYVIEGSSKTLKYLKTSGPMDFEAQNAFSEDQLEIKISGSSDVKFPHNVKLRLGEFSVSGSGDLVFADLDCKNLTSKVSGSGDITLKGKADEARYSVLast
1 -14.600IDP92001 hypothetical protein SpneCM_05688 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100005688 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  9  5TKGFLIFGVVTTVIGFILLFVGIQSDGSRMEELTFGKEVENLEITLH----------------QHALTITDSFDDQIHISPSLSAHHDLITNQNDRTLSLTDKKLSE-SNRFNDVIIGLPKLKGINISNRGQTTIIN-ASLENATLNTN-GYILRIE---GSRIKNSKLTTPNIVNIFDTDLTDSQLE-STEHHFHAENIQVHGKVEL 227
2 -13.500IDP05048 conserved hypothetical protein [Bacillus anthracis str. Ames] BA_4771 [Bacillus anthracis str. Ames]  ali follow..  15  1MKKMIVIILFITIASVVFGIKVFQGKDFKKEKSFEINNIKEIEVDNE----------------NWDIEFKSTDANKIVISAQDKEIDPVKIENDENKIVIKQKQKMNRKKNSICIAIPKKEIDKIVLNKSGDVKIRD-IVVKSIVTK-GKYGDEMIT-GLSAEKGEFT-SESGDLMLKDSLLQDVNIT-STTGDNYVKVKKENMNIT. 201
3 -8.970IDP05275 hypothetical protein lmo2686 [Listeria monocytogenes EGD-e] lmo2686 [Listeria monocytogenes EGD-e]  ali follow..  14  1MKEFLFFAVFTFIMTIGVGVINASASEIENPDNIQEAEVETFDLNGN-------------IAQEKEIVLEDGTEGTLGVMPIIDLKGTYSLANGTSTWKIYWYSGVYNCSFNAKINVSKGKGKITSAYNPWYQFYSPGLDVKKSKLSKTSSGDCKNKISNWNVTLKASVSGK.................................... 170
4 -8.860IDP05437 putative lipoprotein [Bacillus anthracis str. Ames] BA_2898 [Bacillus anthracis str. Ames]  ali follow..  11  1MKKVLLIIPLFIILLSGCSNNDIYGSWEVVDNKNGL-KFETVVKEEKKEKIIQYLVEMQTTKKKEDLYKGSFVKDSYHIDYGNSFTSDQTLQVVDGKLNVYFYA........................................................................................................ 110
5 -7.060IDP05645 hypothetical protein CD3297 [Clostridium difficile 630] CD3297 [Peptoclostridium difficile 630]  ali follow..  9  1MKKQYVFIILASTILGILVGTIFRDYSN--EETVYTSKDKSIRKEIKMTRKSIKELTKEKDKLDKEINSMKQNQKNSEEISEIETLRDSLSDVKGSGIILSIDAIDEKTGNIANSIDYNKILNELKVNGGKYIEINGQRINQYSEVVLAGAQPYEIKCIGDKEKLSNYVDKGSKYLDSIQTNYPMKISIKTEENISMKKMNIPNKLK. 221
6 -6.460IDP91923 hypothetical protein SpneCM_02081 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100002081 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  6  3........................................................................................AQITINHKKARYVRIE-NALSLAEVEVFRFIATNGETAIQVSKSVQPISQTPVKDKTLTIQHSGAYIARYSITWEEVTVDKDGNQVVRSHSWEGNGRNQTAGFVLNLPIKENMRNLRVKI 125
7 -6.430IDP91936 hypothetical protein SpneCM_03100 [Streptococcus pneumoniae str. Canada MDR_19A] SpneCM_010100003100 [Streptococcus pneumoniae str. Canada MDR_19A]  ali follow..  9  1MKKTFFLLVLGLFCLLPLSVFAIHADNTAEFRQKIVYQFEEAAKNGAELADVTSEVTEEADGYTVRVYNPGQEGDIVEVDLVWNLKNLLFLYDDIAELNWQPLTDSSESIEKFEFHVRGDKGAEKLFFHTGKLFREGTIEKSNLDYTIR........................................................... 190
8 -6.430IDP05634 amino-acid ABC transporter,substrate-binding protein [Clostridium difficile 630] CD2174 [Peptoclostridium difficile 630]  ali follow..  12  7IKRNIIKCLVAVLSLTFVITGCSKKEEVKNEKVITVASYVDNGEHKGFEVDMWKEI---------------GKRSGYKIKMEPTGFSSIFGMLDSGKVDVAANFFGMSKERLEKYDASIPYGSDAVKDGNNEINKLEDLKGKVVAVSEGSQGQQVATSVNKDNLFQEKVYGDGTSGLQDLDLGRVSAWIDAELTIVGDAKKANMKVRV 211
9 -6.390IDP05543 hypothetical protein CD2628 [Clostridium difficile 630] CD2628 [Peptoclostridium difficile 630]  ali follow..  13  36.......................NKEEIVLSCDMVIDEEFRFYIPYDSNFTIDTNKYKILIKNHGRFII---DDNELNIIGEGGKEGVIHIEISIGINNIIATDGTALEGGDLHIKSSYESVEKIKANGAIGIYTENDIRILNKDIEVNGEHAIGVYSKGDVEIEETSIKAYSSNNESGLLKDNNKLAQS.................. 210
10 -6.360IDP05655 peptidoglycan binding protein [Listeria monocytogenes EGD-e] lmo0159 [Listeria monocytogenes EGD-e]  ali follow..  11  8LKKVGLAFLSILIVASTIFQTTVVKAATSYGSQ--LNTVELLDKDGVPQTDFGYYDNHYTWSIPNSTNVKAGDTMDFTLPSQLALATDLAFDVKDSKGQVVGTATVKKATNQVTLVFSDYVEKHSDVKGELDFWT----AFNQKVITGNETVDLVFPLENGTTVIDVEVGEKTPVSPTETLFKYGWVDASNPSLIHWVVRVNYAKVNI 213
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 4 6   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;