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Query: HGC00374 gi|162831834|dbj|BABA01012875.1|1.0 TMP00304;, from HGM_OVER

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst VKVEVHYFDELLERIRDIRASEKRVYRKVKEIFALSVDYDSKSQVAQSFFKSVQNKLEYAATGHTAPELIAKRADASKDNMGLTSFKGVKVRRGDVTVAKNYMTHEEISTLNLIVNMYLDYAELQAKGHIPMHMADWESKLGDFLRFNGREVLENFGTVKREVAEKLALEQYEQYDTHRRALEAADDVDELTADVKRLKRLast
1 -7.620sp|P35573|GDE_HUMAN Glycogen debranching enzyme OS=Homo sapiens GN=AGL PE=1 SV=3  ali   12  60.......YDELVPHQISV-VSEERFYTKWNPEALPSNTGEVNFQSGIIAARCAISKLHQELGAKGFIQVYVDQVDED---VSRTAFRNPKTSFYSKEVPQMCIPGKIEEVVLEARTIERNTKPYRKDENSINGTPDITVEIREHIQLNESKIVKQAGVATKGPNEYIQEIEFENLSPGSVIIFRVSLDPHAQVAVGILRN 265
2 -6.840sp|Q9UBW8|CSN7A_HUMAN COP9 signalosome complex subunit 7a OS=Homo sapiens GN=COPS7A PE=1 SV=1  ali follow..  14  43.......FGELLD-VRELAESDFASTFRLLTVFAYGTDYLAEARNLPPLTEAQKNKLRHLSVVTLAAKVKCIPYAVLLEALALRN---RQLEDLVIEAVYADVLRGSLDQRNQRLE--VDYSIGRDIQRQDLTLQEWCVGCEVVLSGIEEQVSRANQHKEQQLGLKQQIES............................. 211
3 -6.380sp|A1L162|YB051_HUMAN Uncharacterized protein LOC285141 OS=Homo sapiens PE=2 SV=1  ali follow..  18  70..........MAEFLRAEMARE---YQLAKKLCQMILIYEPENPEAKEFFTLIEEMLLMEKTQNHEQDGENSDEDSSGESKGESDEELSDESSDE......................................................................................................... 151
4 -6.350sp|O43156|TTI1_HUMAN TEL2-interacting protein 1 homolog OS=Homo sapiens GN=TTI1 PE=1 SV=3  ali   1........NQLLPLAHQARLTRDAPLKVLRTLGSKCGDF--RSRFCKDVLPKLAGSLVTQAPISARAGPVYSHTLAFKLQLAVLQGLGPLCERLD-------LGEGDLNKVADACLIYLSVKQPVKLQEAARSV------FLHLMKVDPDSTWFLLNELYCPVQFTPPHPSLHPVQLHGASGQQNPYTTNVLQLLKELQ. 189
5 -6.350sp|Q9ULX5|RN112_HUMAN RING finger protein 112 OS=Homo sapiens GN=RNF112 PE=2 SV=1  ali   11  4.HYGMVPIQHLDLLVRDSSHPNKAGQGHVGNIFQRLSGRYPKVQELLQG---------------------------KRARCCLLPAPGRRRMNQGHASPGGDTDDDFRHLLGAYVSDVLSAAPQHAKSRRLLTGQQLAQEIKNLSGWMGTSPDEMAAQLHDLRKVEAAKREFEEY-VRQQDVATKRIFSALRVLPDTMRN 196
6 -6.210sp|P05112|IL4_HUMAN(removed signalp:1-24) Interleukin-4 OS=Homo sapiens GN=IL4 PE=1 SV=1  ali follow..  11  7.......LQEIIKTLNSLTEQKTLCTETVTDIFAASKN-------------------------TTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGLNSCPVKEANQSTLENFLERLKTIMR...................................................... 121
7 -6.020sp|A5YKK6|CNOT1_HUMAN CCR4-NOT transcription complex subunit 1 OS=Homo sapiens GN=CNOT1 PE=1 SV=2  ali   13  2.........DLIESL--LRLAEVGQYEQVKQLFSFPIKHCPDTSWHTLRHELISTLMPIFLGNHPNSAIILHYAWHGQGQSAMAEWYMRGEQYDQAKLSRILDVAQDLKALSMLLNG-IDLA-ALASRREYLKLDKW---LTDKIREHGEPFIQACMTFLKRRCPSILGGLAPEKDQPKSAQLPPETLATMLACLQA... 207
8 -5.950sp|Q9H9Q2|CSN7B_HUMAN COP9 signalosome complex subunit 7b OS=Homo sapiens GN=COPS7B PE=1 SV=1  ali follow..  12  43.......FGELLE-VQELAEGANAAYLQLLNLFAYGTDYIANKESLPELSTAQQNKLKHLTIVSLASRMKCIPYSVLLKDLEMRN---RELEDLIIEAVYTDIIQGKLDQRNQLLE--VDFCIGRDIRKKDITLHEWCDGCEAVLLGIEQQVLRNQYKENHNRTQQQVEAEVTNIKKTLKATASSS.............. 227
9 -5.880sp|Q8TCH9|YV004_HUMAN Putative uncharacterized protein FLJ23865 OS=Homo sapiens PE=2 SV=1  ali follow..  17  26.............................................................................SPARGRIQFSGRKSTGSWVTQMENLLLAQPLPDDCEILCGWRSLLHLTFLIGFAPHFPHWNHHCHQHPPSHLTEVLQSSGELAHQLAPSRCSMRAE........................... 123
10 -5.850sp|Q9H246|CA021_HUMAN Uncharacterized protein C1orf21 OS=Homo sapiens GN=C1orf21 PE=1 SV=1  ali follow..  22  91................HISESQQEFFRMLDEKIEKGRDYCSEEEDIT......................................................................................................................................................... 121

FFAS is supported by the NIH grant R01-GM087218-01
1 3 9 8 0 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Pawlowski K, Jaroszewski L, Bierzynski A, Godzik A. Multiple model approach--dealing with alignment ambiguities in protein modeling. Pac Symp Biocomput. 1997;:328-39.