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Query: HGC00422 gi|163631722|dbj|BABG01004545.1|2.0 TMP00397;, from HGM_OVER

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MIMNATDWNTALFEKMSDEQDKFRDWLKSQPPEEILHHTYEYTVREDIVMAMEQLELTDAQAQALLDSPTPLADVYRYFEKLETGHMDVIRDSIENRADDVCRAKEELRTTPIYPHSAAYAREHGELEQYRASNNVNRQCKESIEAAVREHFDGMYLSHDAAKGVIETYGMERVSMVLSNTVQLQDWDGRYSRRNKEWAKTIPNDNPETVRCGYALNSHPAVLDGFIDLVREEQQRSRTQREKLEPSRPSVRDKLKQELPAHKSAAPKKREPERLast
1 -7.380sp|Q8WX92|NELFB_HUMAN Negative elongation factor B OS=Homo sapiens GN=COBRA1 PE=1 SV=1  ali follow..  67.....DELRDKLLERVSAIASEGKAEERYKKLEDLLEKSFSLVKMPSLMCVMKHPKVPEKKLKLVMADKELYRAC-QIWQDNQALFGDEVSPLLKQYILEKESSTELSVLHNFFSPSPKTRRQGEVVQRLTRMVGKNVKLYDMVLQFLRTLFLRMSLHDLDVGEICTVDPCHKFTWCLDACIRERFVDSKRARELQGFLDGVKKGQEQVLGDLSMILCDPFAINTLALSTVRHLQELVGQET................................ 330
2 -6.800sp|Q9UBS5|GABR1_HUMAN(removed signalp:1-19) Gamma-aminobutyric acid type B receptor subunit 1 OS=Homo sapiens GN=GABBR1 PE=1 SV=1  ali   10.RVKEAGIEITFRQSFFSDPAVPVKNLKRQDARIIVGLFYETEARKVFCEVYKERLFGKKYVWFLIGW------YADNWFKIYDPSINCTVDEMTEAVEGHITTEIVMLNPANTRSISNMTSQEFVEKLTKRLKRHPEE--TGGFQEAPLAYDAIWALALALNKTSGGYNNQTITDQIYRAMNSSSFEG---------SGHVVFDASGSRMAWTLI.......................................................... 220
3 -6.160sp|Q9P2R6|RERE_HUMAN Arginine-glutamic acid dipeptide repeats protein OS=Homo sapiens GN=RERE PE=1 SV=2  ali   13  258.......................................................................................................................................................................................................................................KLAKKREEAIEKAKREAEQKAREEREREKEKEKERERERERER 300
4 -6.070sp|Q9P253|VPS18_HUMAN Vacuolar protein sorting-associated protein 18 homolog OS=Homo sapiens GN=VPS18 PE=1 SV=2  ali   101TYLDMNRFDLAK--EYCRERPDCLDTVLAREADFCFRQR-------------------LESARCYALTQSYFEEIALKFL--EARQEEALAEFLQRKLASLKPAERTQATLLTTWLTELYLSRLGALQGDPEALTLYRETKECFRTFLSSPRHKEFASRASIHELLASHGDTEHMVYFAVIMQDYERVVAYHCQHEAYEEALAV...................................................................... 285
5 -5.990sp|O60840|CAC1F_HUMAN Voltage-dependent L-type calcium channel subunit alpha-1F OS=Homo sapiens GN=CACNA1F PE=1 SV=2  ali   12  166....................................................................................................................................................DFNFDNV----SAMMALFTVSTFEGWPALLYKAIDAYAEDHGPIYNYRVEISVFFI--------VYIIIIAFFMMNIFVGFVIITFRAQGEQEYQNCELDKNQRQCVEYALKAQPLRRYIPKNPHQ 280
6 -5.870sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens GN=MUC16 PE=1 SV=2  ali   43FTITNLQYEEDMHRPGSRRFNTTERVL-----QGLLTPLFKNTSVGPLYSGCRLTLLRPEKQEAATGVDTICTHRVDP--IGPGLDRERLYWELSQLTNSITEHTAPVPLLIPFTLNFTITDLHYEENMQHPGSRKFNTTERVLQGLLKPLFKSTSVGPLYSGCRLTLLDRERLYWELSQLTNSVTELGPYT.................................................................................. 299
7 -5.740sp|P42356|PI4KA_HUMAN Phosphatidylinositol 4-kinase alpha OS=Homo sapiens GN=PI4KA PE=1 SV=3  ali   13  114FNIPLEMLRELL---------NLVKKIVEEAVLKSLDAIVASVMEANPSADLYYTSFSDPLYLTMFKM---LRDTLYYMKDLPTSFVKEIHDFVLEQFNTSQGELQKILH--------DADRIHNELSPLKLRCQANAACVDLMVWAVKDEQGAENLCIKLSEKLQSKTSSKVIIAHLPLLICCLQGLGRLCER-------------------------PVVVHSVTPSLR........................................... 300
8 -5.610sp|Q9H3Y0|CRSPL_HUMAN(removed signalp:1-23) Peptidase inhibitor R3HDML OS=Homo sapiens GN=R3HDML PE=1 SV=1  ali follow..  12  10...................................................................................................................................PAQPESTAMRLLSGLEVPRYRRKRHISVRDMNALLDYHNHIRASVY-AANMEYMVWDKRLARAAEAWATQCIWAHGPSQLMRYVGQN........................................................ 97
9 -5.570sp|O75054|IGSF3_HUMAN(removed signalp:1-19) Immunoglobulin superfamily member 3 OS=Homo sapiens GN=IGSF3 PE=1 SV=3  ali   25  218........................................................................................................................................................................FG------ILIITILLVRFKSRNSSKNSDWIKEPHLNYSPTCLEPPVLSIHPGAID.................................................. 275
10 -5.290sp|Q5VT06|CE350_HUMAN Centrosome-associated protein 350 OS=Homo sapiens GN=CEP350 PE=1 SV=1  ali   3.RLAELELSREFLSALGDDQDWFDEDFGLSSSHKIQKNKAEETIVPLMAEPKRVTQQPCETLLAVPHTAEEVEILVHN-STSKRVYKQAVFDLTKEIFEEIFAEDPNLNQPVWMKPCRINSSYFRRVKNPNNLDEIKSFIASEVLKLFSLKKEPNHKTDWQKMMKFGRKKRDRVDHILVQELH---------EEEAQWVN-------DEDELCVKMQLADGIFETLIKDTIDVLNQISEKQGR............................... 263

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 6 2 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.