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Query: HGC00690 gi|162868815|dbj|BABB01001192.1|3.0 TMP00870;, from HGM_OVER

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MFEYILREIFLSVIAFLAGAGVSAGVFAFVLVIGVVPRILRCSRIENIILIENVMICGVVAGNISSVLDTAYNLGFANMPKVPVSNICGNIIIAIYGLCVGIFVGCIAVALAEILHTFPIIYKRMKLRAGLGIIVISMAIGKALGALYYFLTGFVATSLast
1 -9.640sp|P48764|SL9A3_HUMAN(removed signalp:1-25) Sodium/hydrogen exchanger 3 OS=Homo sapiens GN=SLC9A3 PE=1 SV=2  ali   13  16MLASSAETIIFMFLGIS---------------------AVNPFIWTWNTAFVLLTLVFISVYRAIGVVLQTWLLNRYRMVQLEPID---QVVLSYGGL------GAVAFALVVLLDGDKVKEKNLFVSTTIIVVFFTVIFGLTIKPLVQWL....... 138
2 -9.460sp|Q5VYV7|CT094_HUMAN UPF0492 protein C20orf94 OS=Homo sapiens GN=C20orf94 PE=1 SV=1  ali follow..  16  3................SKKFAVKCGNFAVLVDLHILPQFSEQKKEEVCLLLKETID--SRVQEYLEVRKQHRPSNAEFTRSNPLSLKGYGFQITAYFLKRGIRLRCIRSTQNAELCVFPVCVSQLAFSRDLLASQNEDLTERVLHGVSDYF....... 147
3 -9.410sp|Q96Q45|AL2S4_HUMAN Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 4 protein OS=Homo sapiens GN=ALS2CR4 PE=1 SV=1  ali follow..  13  244TVHRAFRMIGLFSHGFLAGCAVWNIVVIYVLASNLLQQYKTLAYPFQSLLYLLLALSTISAFDRIDFAKISVAIRNFLA--------LDPTALASFLYFTALILSLSQQMTSDRIHLYSLWEAGIEEQILQPWIVVNLV--VALLVGLSWLF...... 399
4 -9.380sp|Q14940|SL9A5_HUMAN(removed signalp:1-16) Sodium/hydrogen exchanger 5 OS=Homo sapiens GN=SLC9A5 PE=1 SV=2  ali   11  18TLASCAETVIFMLLGIS---------------------AVDSSKWAWDSGLVLGTLIFILFFRALGVVLQTWVLNQFRLVPLDKID---QVVMSYGGL------GAVAFALVILLDRTKVPAKDYFVATTIVVVFFTVIVGLTIKPLVKWL....... 140
5 -8.530sp|Q9ULF5|S39AA_HUMAN(removed signalp:1-25) Zinc transporter ZIP10 OS=Homo sapiens GN=SLC39A10 PE=1 SV=2  ali   14  168.........LLKYYGHGANSPISTDLFT-----YLCPALLYQ-----------------IDSRLCIEHFDKLLVEDINKDKNLVPEDEANIGASAWIC----IISITVISLLSLLGVILVPIINQGCFKFLLTFLVALAVGTMSGDALLHLLPHSQGG 291
6 -8.510sp|Q9BZ71|PITM3_HUMAN Membrane-associated phosphatidylinositol transfer protein 3 OS=Homo sapiens GN=PITPNM3 PE=1 SV=2  ali   8  127.....THVLLLVLHGGNILDTGAGDPSCKAADIHTFSSVLEKVTRAHFPAALGHILIPAICSEAFSLVSHLNPYSHDEGCLSSSQDHVPLAALPLLAISSPQYQDAVATVIERANQVYREFLKS---SDGIGFSGQVCLIGDCVGGLLAF........ 273
7 -8.510sp|Q496J9|SV2C_HUMAN Synaptic vesicle glycoprotein 2C OS=Homo sapiens GN=SV2C PE=2 SV=1  ali   12  150.........FQWALFFVLGMALMADGVEVFVVGFVLPSAET--PNSGSGWLGSIVYLGMMVGAFFW---LLICMSVNGFFAFLSSFVQGYGFFLFCRLLSGFGIGAIPTVFSYFAEVLAREKR----GEHLSWLCMFWMIGGIYASAMAWAI...... 300
8 -8.420sp|O00562|PITM1_HUMAN Membrane-associated phosphatidylinositol transfer protein 1 OS=Homo sapiens GN=PITPNM1 PE=1 SV=4  ali   7  126.....VHALFLILHSGNILDSGPGDANSKQADVQTLSSAFEAVTRIHFPEALGHVALPPICAAAYALVSNLSPYSHDGDSLSRSQDHIPLAALPLLATSSSRYQGAVATVIARTNQAYSAFLRS---PEGAGFCGQVALIGDGVGGILGF........ 272
9 -8.280sp|Q96T83|SL9A7_HUMAN(removed signalp:1-38) Sodium/hydrogen exchanger 7 OS=Homo sapiens GN=SLC9A7 PE=1 SV=1  ali   23  2........................................................................................................GAMAFALA--IRDTASYARQMMFTTTLLIVFFTVWIGGGTTPMLSWL....... 47
10 -8.120sp|Q9NPL8|CC001_HUMAN(removed signalp:1-24) Transmembrane protein C3orf1 OS=Homo sapiens GN=C3orf1 PE=1 SV=2  ali follow..  19  103..........ATRGFIRYGWRWGWRTAVFVTIFNTVNTSLNVYRNKDALS--HFVIAGAVTGSLFRI-----------------VGLRGLVAGGIIGALLGTPVGGLLMAFQKYSG.......................................... 190
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Schwarzenbacher R, Godzik A, Jaroszewski L. The JCSG MR pipeline: optimized alignments, multiple models and parallel searches. Acta Crystallogr D Biol Crystallogr. 2008 Jan;64(Pt 1):133-40. Epub 2007 Dec 5.