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Query: HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;, from HGM_OVER

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst VRGRIVRLRGARAPLGRGRGAASGALSDERGAGTVLVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADLAALGGATALSSIVAPGDPCEAASRVARANGAEVTTCSVTGEDVVVEVSVEARVLGVSRPAVSSARAGPVDDPLast
1 -8.930sp|Q96A59|MALD3_HUMAN MARVEL domain-containing protein 3 OS=Homo sapiens GN=MARVELD3 PE=2 SV=3  ali follow..  15  266.............................KLPMVTVAMACSGALTALCCLFVAMGVLRVPWH-TEGLLDLIAGGYIPALYSAAYGSPVCKERQALYQSKGYSGFGCSFHGADIGAGIFAALGIVVFALGAVLAIKG...... 384
2 -7.360sp|O15417|TNC18_HUMAN Trinucleotide repeat-containing gene 18 protein OS=Homo sapiens GN=TNRC18 PE=1 SV=3  ali   14  171.......SSSSSSSGSETEGEEEGDKNGDGGCGT--NCSAASSRAASPASSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSTTDEDSSCS------------EAAPAPTAGPSAQA 297
3 -7.320sp|Q96KR4|LMLN_HUMAN Leishmanolysin-like peptidase OS=Homo sapiens GN=LMLN PE=2 SV=2  ali   12  65.....................................................GAEKYGPHSVCLIQKSAFVMEKCERKLSYPDWGSGCYQVSGLKVWVQDTSYLCSRAGQVLPVSIQM-----------NGWIHDGNLLCP 146
4 -7.190sp|Q96PZ7|CSMD1_HUMAN(removed signalp:1-26) CUB and sushi domain-containing protein 1 OS=Homo sapiens GN=CSMD1 PE=1 SV=2  ali   12  129IHGKDFGKFKLERQDPLNPDQDSSSHYHGTSSGSVAAAILVPFFALILSGFA-----YLYKHRTRPKVQYNGYAGHENSNGQASFENPMKPTEAKAVRFDTTLNTCTV.................................. 238
5 -7.150sp|P13473|LAMP2_HUMAN(removed signalp:1-28) Lysosome-associated membrane glycoprotein 2 OS=Homo sapiens GN=LAMP2 PE=1 SV=2  ali follow..  17  285......................................................................IANNNLSYWDAPLGSSYMCNKEQTVSVSGAFQINDCSADDDNFLVPIAVGAALAGVLILVLKHHHAG..... 378
6 -6.890sp|Q5VT25|MRCKA_HUMAN Serine/threonine-protein kinase MRCK alpha OS=Homo sapiens GN=CDC42BPA PE=1 SV=1  ali   15  194..........................GNEEG-GDNKKIHQIELIPNDQLVAVISG-----RNRHVRLFPMSALDGRETDFYKLSETKGCQTVTSGKVRHGALTCLCVAMKRQVLC........................... 290
7 -6.850sp|Q16625|OCLN_HUMAN Occludin OS=Homo sapiens GN=OCLN PE=1 SV=1  ali follow..  17  136.............................AAKGFMLAMAAFCFIAALVIFVTSVIRSEMSRTRMVFIATIVYIMGVNPTAQSSGS---CNQFYT-PAATGLYVDQCVVDPQEAIAIV......................... 248
8 -6.800sp|O14804|TAAR5_HUMAN Trace amine-associated receptor 5 OS=Homo sapiens GN=TAAR5 PE=2 SV=2  ali follow..  14  30.................................TLGIQLVIYLACAAGMLIIVLGNVFVAFKALHTPTNFLLLSLALADMFLGLLVLPLSTIRSVESCWFFGDFLCRLHTYLDTLFCLTSIFHLCFISIDRHCAICDPLL.. 141
9 -6.730sp|Q9P1P5|TAAR2_HUMAN Trace amine-associated receptor 2 OS=Homo sapiens GN=TAAR2 PE=2 SV=2  ali follow..  10  39.................................SLGVRVAMYSFMAGSIFITIFGNLAMIFKQLHTPTNFLILSMAITDFLLGFTIMPYSMIRSVENCWYFGLTFCKIYYSFDLMLSITSIFHLCSVAIDRFYAICYPLL.. 150
10 -6.680sp|Q96PD2|DCBD2_HUMAN(removed signalp:1-66) Discoidin, CUB and LCCL domain-containing protein 2 OS=Homo sapiens GN=DCBLD2 PE=1 SV=1  ali   14  8..........................TKDVALAAVLVPVLVMVLTTLILILVCAWHWRNRKKKTEGTYDLPYWDRAGWWKGMK-PAKAVDHEETPVRYSSSEVNHLSPREVTTVLQADSAEYAQPLVGGIVGTLHQRSTFKP 125
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;