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Query: PB002770 Q744K2_MYCPA/1-559 PB002770; Pfam-B_2770;, from HGM_OVER

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MTMQGDAQCVRGNRNTAWPLAARLFPAMFALLMLVIAGTGSAAAQPSPWTARPFGDRLVGWDTYRRLDLLPYLSADTQSLQLSSFDRSGGDFDISTGNKNGTGGCLAPGGAGCVIAEDHGAGEVDSIWLTRDGGNLRAIGNIRVELDGQTVLDTPVQSLVDGQLGAPFVWPLVANAGESPGGDYIKVPMPYRRSMRISVESHLEYYHVDYRQFPTAEGVSTFSPADPAVDVLDRFRAAGTVDPKPAAPGEVHSNRVIELPGGAEQTIAESTGPASISALRLYLPAPADQSLTGLRLRIEFDGRTTVDSPLGEFFGAGLGPTPVRSLMFAAFPQPDGSMALWCWWPMPFARSARVSLANTGAGPVFGIAAEVTTTPDARWAGALASGRAGYFTARSHAGPTILGQDWPFADEQGRGKFVGVSQTIRGQRTRTAFSDNAPYFLEGAERVYTDGAASPQWYGTGTEDLYEGGWYFKDGTHFSDPLNGQPDQRTATAGCADYCVAVYRIMPAEAIGYHSALRFGIEHGKRNMVEPDYSSTAFLYTQPDAELTGTDDVNPTDPLLast
1 -6.490sp|O95150|TNF15_HUMAN Tumor necrosis factor ligand superfamily member 15 OS=Homo sapiens GN=TNFSF15 PE=1 SV=2  ali follow..  10  1..MAEDLGLSFGETASV-PKARSSSARWALTCCLVLLPFLAGLTT---------------YLLVSQLRAQGEACVQFQALKGQEFAPSHQQVYAPLRADGDKPRAHLTVVRQTPTQHFKNQFPALH-WEHELGLAFTKNR------------------------------------------------MNYTNK-FLLIPESGDYFIYSQVTFRGMTSECSEIRQAGRPNKPDSITVVITKVTDSYPEPTQLLMGTKSVCEVGSNWFQPIYLGAMF-----SLQEGD-----KLMVNVSDISLVDYTKEDKTFFGA................................................................................................................................................................................................................................................... 248
2 -5.750sp|Q9Y238|DLEC1_HUMAN Deleted in lung and esophageal cancer protein 1 OS=Homo sapiens GN=DLEC1 PE=2 SV=2  ali   9  5..........................................................................................................VSGMKKPLVLGISGKPQGLQVAITISKESSDCSTEQWPGHPKELRLD-----------------------------FGSAVPLRTRVTRQLILTNRSPIFSLKFEYFGSPQNSLS-KKTSLPNMPPALLKTVRMQEHLAKREQLDFMESMLSHGKGAAFFPHFSQGPYQQLCIDITGCANMWGEYWD-NLICTVGDLLPEVIPVH---MAAVGCPISSLRTTSYTIDQAQKEPA-----MRFGTTRTLRLNNSSPCDIR.................................................................................................................................................................................................. 238
3 -5.480sp|Q4G0P3|HYDIN_HUMAN Hydrocephalus-inducing protein homolog OS=Homo sapiens GN=HYDIN PE=1 SV=2  ali   11  6...................................................................................................ESSWTFLIPEHNITVPFLLVGKTTEPLISLNKSH-GREARETVQIINKEEQGFDFSFQDNSRYSEGFSNSLLVCPMEGWIPPLSRFPIDIFFNFNLICNVEKKVHPVTLNVKAEGYTMNVEIKCKDRTGSITLLTPNQTNIINFYEVELNECVQCEFNFINTGKFTFSFQAQDVGQSVHATLSFQPLKKCVLTDLELIIKISHGPTFMCNISGCAVSPAIHFSFTSYNFGTCFIYQAGMP---------PYKQTLVITNKEETPMS.................................................................................................................................................................................................. 297
4 -5.470sp|Q9Y375|CIA30_HUMAN Complex I intermediate-associated protein 30, mitochondrial OS=Homo sapiens GN=NDUFAF1 PE=1 SV=2  ali follow..  10  1MALVHKLLRGTYFLRKFSKPTSALYPFLGIRFAEYSSSLQKPVASPGKASSQRKTEGDLDHQKEVALDITSSEEKPDVSFDKAHFRLLKDEIVDHWRGPEGHPLHEVLLEQAKVVWQFRGKEDLDK-WTVTSDKT----------IGGRSEVFLKMGKNNQSAL--------------------------LYGTLSSEAPQDGESTRSGYCAMISRIPRGAFERKMSYD-------------------------------SQFNTLYLRVRGDGRPWMVNIKEDTDFFQRTNQMYSYFMFTRGGEVKIPFSKFFFSNRGRIRDVQHELPLDKISSIGFTLADKVDGPFFLEIDIGVFTDPAHT.................................................................................................................................................................................................... 310
5 -5.440sp|P29965|CD40L_HUMAN CD40 ligand OS=Homo sapiens GN=CD40LG PE=1 SV=1  ali follow..  11  1..MIETYNQTSPRSAA--PISMKIFMYLLTVFLITQMIGSALFAVYLHRRLDKIEDERNLHEDFVFMKTIQRCNTGERSLSLLNCEEIKSQFEGFVKDIMLNKEETKKENSFEMQKGDQNPQIAAHVWAEKGYYTMSNNLVT------------------------------------------------LENGKQLTVKRQGLYYQVTFCSNREASSQAPFIASLCLFERILLRAANTHSSAKPCGQQSIHLGGVFELQPGAS--------------VFVNVTDPS---------QVSHGTGFT-------SFGL................................................................................................................................................................................................................................................... 258
6 -5.340sp|Q15678|PTN14_HUMAN Tyrosine-protein phosphatase non-receptor type 14 OS=Homo sapiens GN=PTPN14 PE=1 SV=2  ali   10  100LEKQKMAGLEAQKRPLMLAALNGLSVARVSGREENRVDATRVPMDERFRTLKKKLEEGMVFTEYEQIPKLPENAERSRIREVVPYEENIPTKENNTGYINASHIKVVVGGAEWHYIATQGPHTCHDFW--------------QMVWEQGVNVIAMVTAEEEGGRTK-----------------HRYWPATYGK-FKVTTKFRT.................................................................................................................................................................................................................................................................................................................................................................... 296
7 -5.280sp|P32971|TNFL8_HUMAN Tumor necrosis factor ligand superfamily member 8 OS=Homo sapiens GN=TNFSF8 PE=2 SV=1  ali follow..  10  1..MDPGLQQSVASHLGTTSRSYFYLTTATLALCLVFTVATIMVLVVQRTDSIPNSPDNVPLKGGNCSEDLLCILKRAPFKKSWAY-AKHLNKTKLSWNKDGILHGVRYQDGNLVIQF---PGIICQLQFLVQCPNNSVDLKLELLINKHIKKQALVTVCESGMQTKHVYQNLSQFLLDYQVNTTISVNVDTFQYIDTSTFPLENVLSI............................................................................................................................................................................................................................................................................................................................................................... 227
8 -5.220sp|Q86WQ0|NR2CA_HUMAN Nuclear receptor 2C2-associated protein OS=Homo sapiens GN=NR2C2AP PE=1 SV=1  ali follow..  9  2..................................................................THSLVCPETVSRVSSVLNRNTRQFGKKHLFDQDEETCWNSDQGPSQWVTLEFPQLIRVSQLQIQFQGGFSSRRGCLEGSQGTQALHKI-----------------VDFYPEDNNSLQTFPIPAAEVDRLKVTFEDATDFF................................................................................................................................................................................................................................................................................................................................................................. 124
9 -5.140sp|P23470|PTPRG_HUMAN(removed signalp:1-26) Receptor-type tyrosine-protein phosphatase gamma OS=Homo sapiens GN=PTPRG PE=1 SV=4  ali   8  10RGEKGSRKCFQTAHFYVEDSSSPRVVPNESIPIIPIPDDMEAIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMRYINILAYDHSPGKDSKHSDYINANYVDGYNKAKAYIATQGPLKSTFEDFW--------------RMIWEQNTGIIVMITNLVEKGRRK-----------------DQYWP----GNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGVPEYALPVRMPETGPVLVHCSAGVGR-TGTYIVIDS.................................................................................................................................................................................................................................................................................. 299
10 -5.010sp|Q8NFJ9|BBS1_HUMAN Bardet-Biedl syndrome 1 protein OS=Homo sapiens GN=BBS1 PE=1 SV=1  ali follow..  11  200ITTMTTLKKNLADEDAVSCLVLGTENKELLVL----------PEAFTILAKMSLPSVPVFLEVSGQFDVEFRLAAACRNGNIYILRRDSKSAQPVGLIRVHKVLVVGSTQDSLHGFTHKG----KKLWTVQMPAAILANGEVRIYRDKALLNVIHTPDAVTSLCFGRYGREDNTLIMTTRGGGLIIKILPPAQAMKLNVRKTRLYVDQTLREREAGTAMHRAFQTDLYLLRLRAARAYLQALESSLSPLSTTAREPLKLH-------AVVQGLGPTFKLTLHLQNTSTTRVLGLLVCFLYNEAPGLNYPLETFVESLSNKGISDIIKVLVLREGQSAPLLSAHVNMPGSEGLAAA............................................................................................................................................................................................................ 593
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 3 8   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;