current user: public
If you have questions about the server, please let us know.

Query: PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;, from HGM_OVER

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .
# Score Template Links and tools%idFirst MCTTNAVNEKISYTINMDTQKKHNLSGTIILVSCFLLLAGACDNSDRIETETQANGVLLNFNASTIDATTTETRSFVPIEGFAKNEYIFGMSVTKDNASRGEIFEGSRNLKATMSRPSGDAPWNWEFSNNASGTVVTPRGPEGKPLRVIAYYPAIAGTENFTDGIPFDFTQTNNPQQKEILYNTNTSYTIPSSGGSDKVTIPLKFQHAYSWISIKVTKSVDKGSHKLSGVSIDNLSGGWIKNKGKINPATGMAMQGAIQGPIGEVRTAEVLDPSGDTATPIIYDFLVPAFMDRNVKDDDLVFTLIIDGKKEIFSLGREHLNNDGDTYGFKQGYANTYNVEFNNSSLNMRLLNWTSTRIDGDFGQNVTNPTNYQEMSFYYAEDNGGWTTALast
1 -8.280sp|Q8N2G4|LYPD1_HUMAN(removed signalp:1-20) Ly6/PLAUR domain-containing protein 1 OS=Homo sapiens GN=LYPD1 PE=1 SV=2  ali follow..  19  81.CNTPLCNGPRPKKRGSSASALRPGLRTTILFLKLALFSAHC........................................................................................................................................................................................................................................................................................................................................................... 121
2 -7.270sp|Q7Z7G8|VP13B_HUMAN Vacuolar protein sorting-associated protein 13B OS=Homo sapiens GN=VPS13B PE=1 SV=2  ali   10  49......................................................................................................................................................................VYVDVVHQCGTVFITVAPEGKAGPILTNTNRAPEKIVTFKMFITQLSLAVFDDHHKASAELLRLTLDNIFLC-VAPGAGPLPGEEPVAALFELYCVEICCGDLQLDNQLYNKSNFHFAVLVCQGEKAEPIQCSKMQSLLISNKELEEYKEKCFIKLCITLNEGKSILCDINEFSFELKPARLYVED..................................... 235
3 -7.150sp|P23467|PTPRB_HUMAN(removed signalp:1-22) Receptor-type tyrosine-protein phosphatase beta OS=Homo sapiens GN=PTPRB PE=1 SV=3  ali   5  97.............................................................................................................................................TATEYRFTSLTP-----RQYKILVLTISGDVQQSAFIEGFTVPSAVKNIHISPNGATDSLTVNWTPGVDSYTVSAFRHSQKVDSQTIPKHVFEHTFHRLEAGEQYQIMIASVSGSLKNQINVVGRTVPASVQGVIADNAYSSYSLIVSWQKAAGVAERYDILLLTENGILLRNTSEPATTKQHKFEDLTPGKKYKIQILTVSGGL........................................... 300
4 -6.830sp|Q93063|EXT2_HUMAN Exostosin-2 OS=Homo sapiens GN=EXT2 PE=1 SV=1  ali   9  1MCASNIRGPALI---RMKTKHRIYYITLFSIVLLGLIATLSCRMHTCFDVYRCGFNPKNKIKVYIYALKKYVDDFGVSVSNTISREYNELLMAISDSDYYTDDINRA-----FVPSIDVLNQNTLRIKETAQAMAQLSRWDRGTNHLLFNMLPGGPPDRDRALLAGGGFSTWTYRQGYDVSIPV---YSPLSAEVDLPEKGPGPRQYFLLSSQVGLHPEYREDLEALQVKHGESVLV........................................................................................................................................................ 282
5 -6.440sp|Q8WXG9|GPR98_HUMAN G-protein coupled receptor 98 OS=Homo sapiens GN=GPR98 PE=1 SV=1  ali   5  2...............................................................................................................................................................SISYAVTTGNSTAHAQQNLDF------------IDLQPNTTVVFPPFIHESHLKFQIVDDTIPEIAESFHIMLLKDTLQGDAVLISPSVVQVTIKPNDKPYGVLSFNSVLFERTVIIDEDRIS-RYEEITVVRNGGTHGNVSANWVVTPNSTDPSPVTADIRPSSGVLHFAQGQM-TIPLTGEAEAYLLQILP..................................... 189
6 -6.210sp|Q8IVV2|LOXH1_HUMAN(removed signalp:1-19) Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens GN=LOXHD1 PE=1 SV=3  ali   6  71....................................................................................................................................................YEIVIETGNGGETRENVWLILEGRKNRSKEFLMENSSRQRAFRKGTTDT--EFDSIYLGDIASLCVGHLAREDRFIPKREL--VKTITITEMEYGNVYFFNCDCLIPLKRKRKYFKVFEVTKTTESFASKVQSLVPVVIVTTGYEPGAGTDANVFVTIFGAN-----TGKRELKQKMRNLFERGSTDRFFLETLELV-VTRLGLAAECG................................ 278
7 -6.210sp|Q9HD43|PTPRH_HUMAN(removed signalp:1-27) Receptor-type tyrosine-protein phosphatase H OS=Homo sapiens GN=PTPRH PE=1 SV=3  ali   7  20.............................................................................................................................................AHTNITVDRLEPGCL-----VFSVWVGKNGINSSRETRNATTAPNPVRNLHMETQTNSSIALCWE---QDYTYWVEYTGDGGGTETRNTTNTSVTAERLEPGTLYTFSVWAEKNGARGSRQNVSISTVPNAVTSLSKQDWTNSTIALAPQGPGQSSYSYWVSWVREGMTDPRTQSTSGTDITLKE--LEAGSLYHLTVTQTKNSVMLW---WKAPGDPHS............................ 266
8 -6.150sp|P02751|FINC_HUMAN(removed signalp:1-20) Fibronectin OS=Homo sapiens GN=FN1 PE=1 SV=4  ali   7  2.......................................................................................................................................................................................................KVTIMWTPPESRVDVIPVNLPGEHGQRLPISRNTFAEVTGLSPGVTYYFKVFAVSHGRESKPLTAQQTTKLDAPTNLQFVNETDSTVLVRWTPPRAQITGYRLTVGLTRRGQPRQYNVGPSVSKYPLRNLQPASEYTVSLEVTETTIVIT---WTPAPRIG............................. 194
9 -6.150sp|Q16832|DDR2_HUMAN(removed signalp:1-23) Discoidin domain-containing receptor 2 OS=Homo sapiens GN=DDR2 PE=1 SV=2  ali   7  1..............................MNVCMRVELYGCVWLDGL----------VSYNAPAGQQFVLPGGSIIYLNDSVYDGAVGYSMTEGLGQLTDGVSGLDDFTQTHEYHVWPGYDYVGWRNESATNGYIEIMFEFDRIRNFTTMKVHCNNMFAKGVKIFKEVQCYFRSEASEWEPNAISFPLVLDDVNPSARFVTVPLHHRMASIKCQYHFADT--------MMFSEITFQSDAAMYNNSEALPTSPMAPTTYDPMLKVDDSNTRILIGCLVAIIFILLMLEKASRRMLDDEMTVSLSLPSDSSMFNNNRSSSPSEQ-----GSNSTY...................................................... 298
10 -6.070sp|P24821|TENA_HUMAN(removed signalp:1-22) Tenascin OS=Homo sapiens GN=TNC PE=1 SV=3  ali   8  58.............................................................................................................................................TQRKLELRGLITSGFTQGHQTKPLRAEIVTEAEPEVDNLLVSDAT-----------PDGFRLSWTADEGVLKIRDTKKQSEPLEITLLAPERTRDITGLREATEYEIELYGISKGRRSQTVSAIATTAMGSPKEVIFSDITENSATVSWRAPTAQVESFRITYVPITGGTPSMVTVDGTKTQTRLVKLIPGVEYLVSINITDSEALAR---WQPA................................. 300
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.