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Query: PB006154 _JGI.0331794_ 2004021056 [Human Gut Community Subject 7], from HGM_OVER

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst ASYISVPRDLTKVKSKVMFNLTKRQLICFGMAVLIGVPSFFLMKTVMKTNTAVMGMMVIMMPFFFLAMYEKNGQPLEVILEHMIQAIFQRPKIRPYVTDNYYAALLRQAKAEKEVEEIVRLSQKEKSGEKNIHNAGGVKQSRPDGSKGNRKKRPLast
1 -13.200sp|O96005|CLPT1_HUMAN Cleft lip and palate transmembrane protein 1 OS=Homo sapiens GN=CLPTM1 PE=1 SV=1  ali   12  72...TMTPQLFINYKLKSVAHLPWRMLTYKALNTFIDDLFAFVIKMPVMYRIGCLRDDVVFFIYLY--------------------------QRWIYRVDPTRVNEFGMSGEDPTAAAPVAEVPTAAGALTPTPAPTTTTATREEASTSLPTKP. 195
2 -11.700sp|Q8N2U9|PQLC1_HUMAN(removed signalp:1-24) PQ-loop repeat-containing protein 1 OS=Homo sapiens GN=PQLC1 PE=2 SV=1  ali follow..  7  159.AMLGVPQLYRNHRHQSTEGMSIKMVLMWTSGDAFKTAYFLLKGAPLQFSVCGLLQVLVDLAILGQAYA..................................................................................... 226
3 -11.600sp|Q8N755|PQLC3_HUMAN(removed signalp:1-19) PQ-loop repeat-containing protein 3 OS=Homo sapiens GN=PQLC3 PE=2 SV=1  ali follow..  7  1...LKLPQISAVLAARSARGLSLPSLLLELAGFLVFLRYQCYYGYPPLTYLEYPILIAQDVILLLCIFH..................................................................................... 66
4 -10.900sp|Q8N309|LRC43_HUMAN Leucine-rich repeat-containing protein 43 OS=Homo sapiens GN=LRRC43 PE=2 SV=2  ali   11  179.........................................................................VPLKAFLLAGTTVTIVEEKILSWPVVLPAVDSPLSAKKGKGEKDKKGKEKDRTGKGEKEPAKEWKVLKKKKEPPKELRQDP 259
5 -9.520sp|Q8N309|LRC43_HUMAN Leucine-rich repeat-containing protein 43 OS=Homo sapiens GN=LRRC43 PE=2 SV=2  ali   11  30..........................................................................PLKAFLLAGTTVTIVEEKILSWPVVLPAVDSPLSAKKGKGEKDKKGKEKDRTGKGEKEPAKEWKVLKKKKEPPKELRQDP 109
6 -9.060sp|Q9NPL8|CC001_HUMAN(removed signalp:1-24) Transmembrane protein C3orf1 OS=Homo sapiens GN=C3orf1 PE=1 SV=2  ali follow..  13  123TIFNTVNTSLNVYRNK-------DALSHFVIAGAVTGSLFRINVGLRGLVAGGIIGALLGTPVGGLAFQKYSGETVQE----------RKQKDRKALHELKLEEWKGRLQVTEHLPEKIESSLQEDEPENDAKKIEALLNLPRNPSVIDKQDK. 260
7 -8.990sp|Q6ZP29|PQLC2_HUMAN PQ-loop repeat-containing protein 2 OS=Homo sapiens GN=PQLC2 PE=2 SV=1  ali follow..  9  199....RLPQIRTNFLRKSTQGISYSLFALVMLGNTLYGLSVLLKNPEEGQSEGSYLLHHLPWLVGSLGVLLLD-------TIISIQFLVYRRSTAASELEPLLPS.................................................. 291
8 -8.950sp|Q14687|GSE1_HUMAN Genetic suppressor element 1 OS=Homo sapiens GN=GSE1 PE=1 SV=3  ali   10  243................................................................................................AREKELLAAKALEPSFLPVAELHGLRGHATEERGKPSEQLTPTRAEKLKDAGLQAPKP 300
9 -8.840sp|Q86SQ6|GP123_HUMAN Probable G-protein coupled receptor 123 OS=Homo sapiens GN=GPR123 PE=2 SV=3  ali follow..  3  1.MDLKTVLSLPRYPGEFLHPVVYACTAVMLLCLLASFVTYIVHQSAIRISLNFCFHAALTFTVFAGGINRTKYPILCQAVGIVLHYSTLST--MLWIGVTARNIYKQVTKKAPLCLDTDQPPYPRQPLLR........................ 134
10 -8.710sp|Q8TD20|GTR12_HUMAN Solute carrier family 2, facilitated glucose transporter member 12 OS=Homo sapiens GN=SLC2A12 PE=2 SV=1  ali   7  31PMPWLVLSEIFPGGIR---AMALTSSMNWGINLLISL-TFLTVTDLIGLPWVCFIYTIMSLASLLFVVMETKGCSLEQ-----ISMELAKVNYVKNNICFMSHHQEELVPKQPQKRKPQEQLLECNKLCGRGQSRQLSPET............. 167
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 2 2   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li Z, Ye Y, Godzik A. Flexible Structural Neighborhood--a database of protein structural similarities and alignments. Nucleic Acids Res. 2006 Jan 1;34(Database issue):D277-80.