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Query: PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;, from HGM_OVER

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .
# Score Template Links and tools%idFirst MNILNNKNKRTSIFKALALCLFAAVSFTFVSCDDDMDIQQSYPFTVETMPVPNKVTKGQTVEIRCELKKTGDFANTLYTIRYFQFEGEGTLKMDNGITFLPNDRYLLENEKFRLYYTAQGDEAHNFIVVVEDNFGNSYELEFDFNNRNVKDDGVITVVPIGNFKPLTLast
1 -12.400sp|Q0P6H9|TMM62_HUMAN(removed signalp:1-29) Transmembrane protein 62 OS=Homo sapiens GN=TMEM62 PE=1 SV=1  ali   12  134...................................VLITNPKSLLYSCGEHEPLERLLHSTHIRVLAFSLSSITSVTVKI--------------DGVHLGQAVHVSGPIFVLKWNPRNYSSGTHNIEVIVQDSAGRSKSVHHIFSVQENN................. 234
2 -11.000sp|Q5SZK8|FREM2_HUMAN(removed signalp:1-46) FRAS1-related extracellular matrix protein 2 OS=Homo sapiens GN=FREM2 PE=1 SV=2  ali   14  110.........................SFEFQVTDGRNPVFRTFRISISDVDNKKPVVTIHKLVVS--TVEDRDTPDKLLKFTITQVPIHGHLLFNNTRPVMVFTKQDLNENLISYKHDGTESSEDSFSFTVTDGTHTDFYVFPDTVFETRRPVMKIQVLAVDNSVPQI 262
3 -10.600sp|Q6UVK1|CSPG4_HUMAN(removed signalp:1-29) Chondroitin sulfate proteoglycan 4 OS=Homo sapiens GN=CSPG4 PE=1 SV=2  ali   6  1................................................................LRVSGPYFPTLLGLSLQVLEPPQHGALQKEDGPQARTLSAFSVEEQLIRYVHDGSETLTDSFVLMANASEMDRQSHPVAFTVTVLPVNDQPPILTTNTGLQMW 106
4 -10.400sp|P40967|PME17_HUMAN(removed signalp:1-23) Melanocyte protein Pmel 17 OS=Homo sapiens GN=SILV PE=1 SV=2  ali   10  185..............................TITDQVPFSVSVSQLRALDGGNKHFLRNQPLTFALQLHPSGYLAEADLSYTWDFGDSSGTLISRALVV----------------THTYLEPGPVTAQVVLQAAIPLTSCGSSPVPGTTDGHRPTAEAPNTT...... 300
5 -10.100sp|Q9HCE1|MOV10_HUMAN Putative helicase MOV-10 OS=Homo sapiens GN=MOV10 PE=1 SV=2  ali   9  117............................YLHGKHGVDVEVQGPHEARDGQLLIRLDLNRKEVLTLRLRNGGTQSVTLTHLFPLCRTPQFAFYNEDQEPLGPGECYELH-----VHCKTSFVGYFPVLWELLGPGESGSEGAGTFYIAR................... 236
6 -9.910sp|Q6UVK1|CSPG4_HUMAN(removed signalp:1-29) Chondroitin sulfate proteoglycan 4 OS=Homo sapiens GN=CSPG4 PE=1 SV=2  ali   10  66..................................QVNPVNDPPHIIFPHGSLMVILEHTQKPLGPEVFQAYDPDSACEGLTFQVLGTGLPVERRDQPGEPATEFSCRELEAGSLVYVHRGGPAQDLTFRVSDGLQASPPATLKVVAIRPA................. 183
7 -9.850sp|Q6UVK1|CSPG4_HUMAN(removed signalp:1-29) Chondroitin sulfate proteoglycan 4 OS=Homo sapiens GN=CSPG4 PE=1 SV=2  ali   8  102.........................AFSLDVASGLGAPLEGVLVELEVLPAA-SVPEGGSLTLALRVSGPYFPTLLGLSLQVLEPPQHGALQKEDGPQARTLSAFSVEEQLIRYVHDGSETLTDSFVLMANASEMDRQSHPVAFTVTVLPVNDQPPILTTNTGLQMW 256
8 -9.790sp|Q8IZA0|K319L_HUMAN Dyslexia-associated protein KIAA0319-like protein OS=Homo sapiens GN=KIAA0319L PE=1 SV=2  ali   12  125........................STVIDGSQSTDDDKIVQYHWEELKGPLREEKISEDTAILKLSKLVPG-----NYTFSLTVVDSDGSITLFGNQSTDDHGITSYEVRTPTLQLSAMQEGDYTYQLTVTDTIGQQATAQVTVIVQPEN................. 295
9 -9.760sp|Q5SZK8|FREM2_HUMAN(removed signalp:1-46) FRAS1-related extracellular matrix protein 2 OS=Homo sapiens GN=FREM2 PE=1 SV=2  ali   15  156...........................FQFQVEDRAGNVAPGTFTLYLHPVDNQPPEILNTGFTIQ-VNDVDTDVAHISFTLTQAPKHGHMRVSGQILHVGGLFHLEDIKQGRVSYAGDKSLTDSCSLEVSDRHH-VVPITLRVNVRPVDDEVPILSHP........ 300
10 -9.750sp|Q5H8C1|FREM1_HUMAN(removed signalp:1-21) FRAS1-related extracellular matrix protein 1 OS=Homo sapiens GN=FREM1 PE=1 SV=3  ali   13  127.........................QFTFSVSNQHGGTLHGICFNITILPVDNQVPEAFTNPLKVTLISDADTKLDNIDLSLRELPLHGRVELNGFPLNSGGTFSWGDLHTLKVRYQGTEVLQDDLLLEVTDGTN-SAEFVLHVEVFPVNDEPPVLKADLMPVMNCS 281
11 -9.600sp|Q5VV43|K0319_HUMAN(removed signalp:1-20) Dyslexia-associated protein KIAA0319 OS=Homo sapiens GN=KIAA0319 PE=1 SV=1  ali   12  1............................................................................................................DHSVALQLTNLVEGVYTFHLRVTDSQGASDTDTATVEVQPDPRKSGLVELTLQVGV... 56
12 -9.570sp|Q86XX4|FRAS1_HUMAN(removed signalp:1-26) Extracellular matrix protein FRAS1 OS=Homo sapiens GN=FRAS1 PE=2 SV=1  ali   15  127.........................SFYFSVSDMDHNHLDNQIFTIMITPAENPVDEGGRAPLSFFATDDDDNLQRDAIIKLSALPKYGCIENTGTGDRFGPETASDLEASFPIYYFSIEPTHDIFSFYVSDGTSRSEIHSINITIERKNDEPPRMTLQLSSGVVIS 300
13 -9.560sp|Q6UVK1|CSPG4_HUMAN(removed signalp:1-29) Chondroitin sulfate proteoglycan 4 OS=Homo sapiens GN=CSPG4 PE=1 SV=2  ali   14  163.....................................................RLTRGSRAPISRAQLSVVDPDSAPGEIEYEVQRANGFLSLVGGGLGPVTRFTQADVDSGRLAFVANSSVAGIFQLSMSDGASPPLPMSLAVDILPSAIEVQLRVPQALGRSSLS 283
14 -9.500sp|Q4LDE5|SVEP1_HUMAN(removed signalp:1-17) Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 OS=Homo sapiens GN=SVEP1 PE=1 SV=3  ali   14  168..............................SCIFHIKVIDAEPPVIDWCRSPPPVQVSEKVH-AASWDEPQFSDNSGAELVITRSHTQGDLF---------------------------PQGETIVQYTATDPSGNNRTCDIHIVIKGSP-DFICTPDNTGVNCTLT 285
15 -9.480sp|Q8IZA0|K319L_HUMAN Dyslexia-associated protein KIAA0319-like protein OS=Homo sapiens GN=KIAA0319L PE=1 SV=2  ali   10  2...................................................................................................................LSNLVEGTYTFHLKVTDAKGESDTDRTTVEVKPDPRKNNLVEIILDINVS.. 51
16 -9.430sp|Q5SZK8|FREM2_HUMAN(removed signalp:1-46) FRAS1-related extracellular matrix protein 2 OS=Homo sapiens GN=FREM2 PE=1 SV=2  ali   10  1..........................................................ENKLITPFELTVEDRDTPDKLLKFTITQIHGHLLFNNTRPVMVFTKQDLNENLISYKHDGTESSEDSFSFTVTDGTHTDFYVFPDTVFETRR................. 94
17 -9.320sp|Q0P6H9|TMM62_HUMAN(removed signalp:1-29) Transmembrane protein 62 OS=Homo sapiens GN=TMEM62 PE=1 SV=1  ali   15  5........................................................LLHSTHIRVLAFSLSSITSVTVKI--------------DGVHLGQAVHVSGPIFVLKWNPRNYSSGTHNIEVIVQDSAGRSKSVHHIFSVQEN.................. 83
18 -9.230sp|Q5VV43|K0319_HUMAN(removed signalp:1-20) Dyslexia-associated protein KIAA0319 OS=Homo sapiens GN=KIAA0319 PE=1 SV=1  ali   11  1.......................................NNRPPVAVAGPDKELIFPVESATLDGSSSSD---DHGIVFYHWEHVRGPSAVEMENID-------------KAIATVTGLQVGTYHFRLTVKDQQGLSSTSTLTVAVKKENNSPPRARAGGRHVL... 109
19 -9.210sp|Q96PQ0|SORC2_HUMAN VPS10 domain-containing receptor SorCS2 OS=Homo sapiens GN=SORCS2 PE=1 SV=3  ali   18  4.........................KVVSNVCEGGVDMQQSQGLQVSIQGEAVAVRPGEDVLFVVRQE-QGDVLTTKYQVDL----GDGFKAMYVNLTLTGE----------PIRHRYESPGIYRVSVRAENTAG-HDEAVLFVQVNSPLQALYLEVVPVNQEVNLT 143
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 0 9 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Jaroszewski L, Li W, Godzik A. A segment alignment approach to protein comparison. Bioinformatics. 2003 Apr 12;19(6):742-9.