current user: public
If you have questions about the server, please let us know.

Query: PB022815 A4DEQ0_LISMO/1-452 PB022815; Pfam-B_22815;, from HGM_OVER

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .  270    .  280    .  290    .  300    .  310    .  320    .  330    .  340    .  350    .  360    .  370    .  380    .  390    .  400    .  410    .  420    .  430    .  440    .  450
# Score Template Links and tools%idFirst MKREAQNYIDNKLKPPKAFFEWCFSQIPTYKWSNKKETILASNRKNCSVIEQKLRKNSRLTFFGKLNVFGIVLVTSKRIEIQSYAFWNRVVEGKEIIEFDLVNFEQFAEGEHVKVASSDGKMWFGLIPVYGGMSGGPYSMIQLFENDWKEKIRSKSELKYLEIPHLDFKEIETIYKYRVEIEFLQKIKARQLAKEVMYPVTQYTNGSFRKTVDMRTINSKWLKENKPFFKNSDRGFMEFELARRIQKRRGKVVSGIEKYLDYRAINKIPEGVGIVRFQNWIIKNKVDFSYYLDYLNLMRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEVEEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTEGKALSHCVGGSNYIKQHIEGKTTIIFVRDKQDLEKSLYTLEYKNGQIYQLRGKHNCDPTKDVQMAANKWAKLLKSKTKVLQNLast
1 -10.500sp|P42684|ABL2_HUMAN Tyrosine-protein kinase ABL2 OS=Homo sapiens GN=ABL2 PE=1 SV=1  ali   15  199....................................................................................................................................................................................................................................................................................................................................................................ALTEPVPNSQLVDTGHQLLDCS---GYVDCIPQTRNK-FAFRE------AVSKLELSLQELQVSSAAAGVPGTNPVLNNLLSCVQEISDVVQR... 282
2 -9.670sp|Q9BX63|FANCJ_HUMAN Fanconi anemia group J protein OS=Homo sapiens GN=BRIP1 PE=1 SV=1  ali   13  3.........................................................................................................................................................................................................................................................................................................................................DGKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKAC-----YTARELIQDADIIFC---DAQIRESMDLNLKEQVVIEAHNIEDCARESASYSVTEVQLRFARDELDSMVN 127
3 -9.120sp|A8MPP1|D11L8_HUMAN Putative ATP-dependent RNA helicase DDX11-like protein 8 OS=Homo sapiens GN=DDX11L8 PE=1 SV=1  ali   9  29.................................................................................................................................................................................................................................................................................................................................................................RDEALAEVKDMEQLLALGKEARAC-----YRSRLAIPAAKLVVL---HAATRQAAGIRLQDQVVIEAHNLIDTITGCQAHSQLLQYMERYGKRLKAKN. 139
4 -9.090sp|Q96FC9|DDX11_HUMAN Probable ATP-dependent RNA helicase DDX11 OS=Homo sapiens GN=DDX11 PE=1 SV=1  ali   9  27.................................................................................................................................................................................................................................................................................................................................................................RDEALAEVKDMEQLLALGKEARAC-----YGSRLAIPAAQLVVL---HAATRQAAGIRLQDQVVIEAHNLIDTITGCQAHSQLLQYVERYGKRLKAKN. 137
5 -8.980sp|Q92771|DDX12_HUMAN Probable ATP-dependent RNA helicase DDX12 OS=Homo sapiens GN=DDX12 PE=2 SV=3  ali   8  5..............................................................................................................................................................................................................................................................................................................................VDMQRSRHEKKKGAEEEKPKRRRQEKQ-HEQMGLLRDEALAEVKDMEQLLALGKEARAC-----YGSRLAIPAAQLVVL---HAATRQAAGIRLQDQVVIEAHNLIDTTTSCQAHSQLLQYMERYGKRLKAKN. 156
6 -8.720sp|Q16667|CDKN3_HUMAN Cyclin-dependent kinase inhibitor 3 OS=Homo sapiens GN=CDKN3 PE=1 SV=1  ali follow..  9  58................................................................................................................................................................................................................................................................................................RNVQKDTEELKSCGIQD---------VFCTRGELSKYRVPNLLDLYQQCGIITHHHPIADGGTPDIASCCEIMEELTTCLKNYRKT-HCYGGLG-----RSCLVAACLLLYLSDTISPEQAID----SLRDLRGSGAIQTIKQ-YNYLHEFRDKLAAHLSSRDS 205
7 -8.600sp|P18074|ERCC2_HUMAN TFIIH basal transcription factor complex helicase XPD subunit OS=Homo sapiens GN=ERCC2 PE=1 SV=1  ali   9  24........................................................................................................................................................................................................................................................................................................................................................................IYNLDDLKALGRRQGWC-----FLARYSILHANVVVY---DPKIADLVSKELARKAVVVFDEAHNDRCQGNLETLQKTVLRIKETDEQRLRD 133
8 -8.580sp|Q9H2Y7|ZF106_HUMAN Zinc finger protein 106 homolog OS=Homo sapiens GN=ZFP106 PE=1 SV=1  ali   17  8............................................................................................................................................................................................................................................................................................................................................................................CPSSPFPRDISHCVGLSAYAKHISGHKDNVDAQEREDDGKGEEEEEDYFDKELIQLIKQRKEQSRQDEPSNSNQEINSDDRRPQWRRE 106
9 -8.110sp|Q9BX63|FANCJ_HUMAN Fanconi anemia group J protein OS=Homo sapiens GN=BRIP1 PE=1 SV=1  ali   11  100............................................................................................................................................................................................................................................................................................TRTHKQIAQITRELRRTAYSGVPMTILSSRDHTCVHPEVVGNFNRNEKNGKSCYFYHGVHKISDQHTLQTFQGMCKAWDIEELVSLGKKLKAC-----YTARELIQDADIIFC---DAQIRESMDLNLKEQVVIEAHNIEDCARESASYSVTEVQLRFARDELDSMVN 277
10 -8.020sp|P48382|RFX5_HUMAN DNA-binding protein RFX5 OS=Homo sapiens GN=RFX5 PE=1 SV=1  ali   17  1..............................................................................................................................................................................................................................................................................................................................................................................LGGRGQS-KYC-----Y-----SG------IRRKTLVSMPPLGLDLKPEMGPEVTPAPRDELVEAACALTCDWAERLKRSFSSIVE 75
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
Comments and questions to: webmaster
Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.