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Query: PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503], from HGM_OVER

Results of FFAS03 search in H.sapiens
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140    .  150    .  160    .  170    .  180    .  190    .  200    .  210    .  220    .  230    .  240    .  250    .  260    .
# Score Template Links and tools%idFirst MKTGIRVTVYALLAMILFSCEHKELCFHHPHMVTLRVDFDWKNAPQADPEGMCVYFYPEEGESPIRFDFAGKDGGSVEIKEGRYRILCYNNDTESLLFRGMEGFDTHEGYTRDGNVFESIYGNGAHYAPPAKGSEDERVVICPDMMWGSCARNVEITELGLSYECISFADKDKVEWIESSEHVITLYPAELICTYTYEVRNVKNMEYMTQACGSLSSMAPSMLFANEELDRECVTVPFETELHLESSKMTGKFYTFGHHEENARPHKLast
1 -8.390sp|Q8WW62|TMED6_HUMAN(removed signalp:1-21) Transmembrane emp24 domain-containing protein 6 OS=Homo sapiens GN=TMED6 PE=2 SV=2  ali follow..  6  1.QKTEPLSGSGDQPLFRGACFWQFAHQTGYFYFSYEVQ---RTVGMSHDRHVAATAHNPQGFLIDTSQGVRGQINFSTQETGFYQLCLSNQHNH............................................................................................................................................................................. 105
2 -7.940sp|P22105|TENX_HUMAN(removed signalp:1-23) Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=3  ali   8  34...................................TLELGWLR-PQAEVDRFVVSYVSAGNQRVRLEVPPEADGTLLTLMPGVYVVTVTAERGRAVSYPASVRANTEEREEESPPRPSLSQPPRRPWGNLTAELSRFRGTVQDERHLRAHGYPLRANQTYTSVARHIHEYLQRQVLGSSADGALLVSLRGQFERVVLRWRPQPPAEG-PGGELTVPGTTRTVSLPDLRPGTTYHVEVHGVRAGQTSKSYAFITTT............ 257
3 -7.430sp|Q13683|ITA7_HUMAN(removed signalp:1-33) Integrin alpha-7 OS=Homo sapiens GN=ITGA7 PE=1 SV=3  ali   7  29LNAHQPSTQRAEIHFLKQGCGEDKICQS---NLQLVRARFCTRVSDDVDGTTALFALSGQPVIGLELMVTNLPSDPAQPQDDAHEAQLLVMLPDSLHYSGVRALDPAEKPLCLSNENASHVECELGNPMKRGAQVTFYLILSTSGISIETTELEVELLLATISEQELHPVSARARVFIELPLSIAGMAIPQQLFFSGVVRGERAMQSERDVGSKVKYEVTVSNQGQSLRTLGSAFLNIMWPHEIANGK................... 284
4 -7.260sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=2  ali   9  26...................................TITIAWVKPLFDGGAPITGYTVEYKKSDDTDWKTSIQSLRGTEYAEYVFRVKSVNKVGASDPSDSSDPQIAKEREEEPLFDIDSEMRKTLIVKAGASFTMTVPFRGRPVPNVLWSKPDTDLR-----------TRAYVDTTDSRTSLTIENANRNDSGKYTLTIQNVLSAASLTLVVKVLDTPGPPTNITVQDVTKESAVLSWDVPENDGGAPVKNSYKVTNLQEGAIYYFR 277
5 -6.800sp|Q9HD43|PTPRH_HUMAN(removed signalp:1-27) Receptor-type tyrosine-protein phosphatase H OS=Homo sapiens GN=PTPRH PE=1 SV=3  ali   10  2......................TSLSKQDWTNSTIALRWTAPQGPGQSSYSYWVSWVREGMTDPRTQSTSGTDITLKELEAGSYHLTVWAERNEVRGYNSTLTAATAPNEVTDLQNETQTKNSVMLWWKAPGDPHSQLYVYW-----------VQWASKGHPRRGQDPQANWVNQTSRTNETWYKVEALEPGTLYNFTVWAERNDVASSTQSLCASTYPYGVNLIWSCPQGGYEAFELEVGGQRGSQDRSSAVSVLGLGPARS.... 249
6 -6.780sp|P22105|TENX_HUMAN(removed signalp:1-23) Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=3  ali   6  38...................................SLHLSWT-VPEGQFDTFMVQYRDRDGRPQVVPVEGPERSFVVSLDPDHYRFTLFGIANKKRYGPLTADGTTAPERKEEPPRPEFLEQPLLGELTVTGVTPDSLRLS------QGPFDSFMVQ-------YKDAQGQPQAVPVAGDENEVTVPGLDPDRKYKMNLYGLRGRQRVGPESVVAKTAPQE-ELTVTGSSPDSLSLFFTVQYKDRDGR-ESEVTVGGLEPGHK.... 299
7 -6.610sp|P22105|TENX_HUMAN(removed signalp:1-23) Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=3  ali   7  5...................................TLHLSWM-VTEGEFDSFEIQYTDRDGQLQMVRIGGDRNDITLSLESDHYLVTLYGKHVGPVHVEALTVPEEEKPSEPPTATPEPPIKPRLGELTVTDATPDSLSLSEPDHKYKMNLYGFHGGQRMGPVSVVGVTEPSMLTVTGSSPDSLSLSPQGRFDSFTVQYKDRDGRPQVVRVGGTVGGLEPGYGLHEGRRVGPVSAVGVTAPEEESPDAPLAKLRLGQMT........ 300
8 -6.610sp|P22105|TENX_HUMAN(removed signalp:1-23) Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=3  ali   10  101...................................SLSLFWT-VPQGSFDSFTVQYKDRDGRPRAVRVGGKESEVTVGLEPGKYKMHLYGLHEGQRVGPVSAVGVTAPQQEETPPATESPLEPRLGELTVTDVTPNSVGLS------EGQFDSFIVQYKDKD-------GQPQVVPVAADQREVTVYNLEPERKYKMNMYGLHDGQRMGPLSVVIVTAPAT-EPRLGELTVTDIT................................ 298
9 -6.600sp|P23229|ITA6_HUMAN(removed signalp:1-23) Integrin alpha-6 OS=Homo sapiens GN=ITGA6 PE=1 SV=4  ali   5  23LNSDEPKTAHIDVHFLKEGCGDDNVCNS-----NLKLEYKFCTREGNQQKGVPELVLKDQKDIALEITVTNSPSNPRNPTDDAHEAKLIATFPDTLTYSAYRELRAFPEKQLSCVANQNGSQADCELGNPFKRNSNVTFLSTTEVTFDTPDLDINLKLETTSNQDNLAPITAKAKVVIELLLSVSGVAKPSQVYFGGTVVGEQAMKSEDEVGSLIEYEFRVINLGKPLTNLGTATLNIQWPKEISNGK................... 279
10 -6.540sp|Q9Y3A6|TMED5_HUMAN(removed signalp:1-27) Transmembrane emp24 domain-containing protein 5 OS=Homo sapiens GN=TMED5 PE=1 SV=1  ali follow..  13  19..................ECFYQPMPLKASLEIEYQVL-------DGAGLDIDFHLASPEGKTLVFEQRKSDGVHTVETEVGDYMFCFDNTFST............................................................................................................................................................................. 87
FFAS is supported by the NIH grant R01-GM087218-01
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Godzik A. cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics. 2006 May 26;