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Query: HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst LSKEVNQEERAPRTVADVKEMLTKHSNGEIQRTIQNCITILQNDHVLADAIRLNLLSERIDIVKPVGWPRSGKTLNDTDMKYILRRMEKYGISSEKKIESAIRIVGNENPYHPIRDYLNGLLast
1 -69.600HGC00248 gi|162576253|dbj|BAAV01029229.1|2.0 TMP00024;  ali  100  1LSKEVNQEERAPRTVADVKEMLTKHSNGEIQRTIQNCITILQNDHVLADAIRLNLLSERIDIVKPVGWPRSGKTLNDTDMKYILRRMEKYGISSEKKIESAIRIVGNENPYHPIRDYLNGL 121
2 -3.020HGC00915 gi|162810474|dbj|BABA01034235.1|2.0 TMP01234;  ali follow..  23  12...............................................................................................KEEDNILKKVGKKNSFKVPEGYFENL 37
3 -2.900PB003564 gi|46242789|gb|AAS83494.1| TraD [Bacteroides fragilis]  ali follow..  7  106..GNTETVSRPTQVPEDKLDETFTSIPPSELEYGEDKPEDEEPDKKQASGSSFEDIDMAVHTIWK-------ESPSDEEMRHAGKVMTE--LDGTELFTRITERLTDEAMSERLAKAMA.. 213
4 -2.480PB044380 A7LRP7_BACOV/1-223 PB044380; Pfam-B_44380;  ali follow..  10  87.TAADFIGEEEDVAEEEVECKLPLEEMRMLKEEQEELDGTYPAVDAVSRVVTPDDLDNAGNVLF----KLNDADKDEEKSLRAALTLHT--IRETDLFEIFSSQVENKNVIDSLMGYLDG. 200
5 -2.360PB062763 Q9F6U5_BACTN/1-245 PB062763; Pfam-B_62763;  ali follow..  7  106..GNTETASRPTQVPEDKLDETFTSISPEELEYGEDEPEDDEPGKGQASGSAFEDIDMAVRTIKK-------DSPSEAEMRHAGKVMTE--LDGTELYSRITERLTDEPMSERLAKAMAV. 214
6 -2.330PB011130 gi|88806557|ref|ZP_01122074.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]gi|88783389|gb|EAR14561.1| hypothetical protein RB2501_00756 [Robiginitalea biformata HTCC2501]  ali follow..  33  17..........................................................................................................DENAYQKLLRYLEAV 31
7 -2.330PB044572 Q8A533_BACTN/1-343 PB044572; Pfam-B_44572;  ali follow..  9  123.......KLAHTQEEQGWIRETELKESFVPTDSISQAIHFFSDTHASYFMIIFALFVGVYLFRAFRRKQLQLVYFNDIDSVLFLCLLMAFSATVYESMQVFVPDTWEHFYFNPTLSFLLSI 248
8 -2.300HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;  ali follow..  6  87.........................................................................PMTEEGRTAVAQYLNDAYNAEPERWSAHPSILDCEPWTPPAPE..... 129
9 -2.180PB007740 Q89YT2_BACTN/1-193 PB007740; Pfam-B_7740;  ali follow..  7  23....AQNEENKERKQRPTPEQMMQMQTNQMVRALM-----LDDATAAKFTPIYEKYLKELRECRMMNFKPRARKDAAQGTEANTAKETPKPVMTDAEIAKMLKDQQSRKMLDIREKYYNEF 136
10 -2.010PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  8  24...........................................................................LKRMPQPVTALLAAMITPAVLISGAGTLIMSTSTRVGRATDRVRGL 69
FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 9 4 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Jaroszewski L, Godzik A. Tolerating some redundancy significantly speeds up clustering of large protein databases. Bioinformatics. 2002 Jan;18(1):77-82.