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Query: HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .  140
# Score Template Links and tools%idFirst VRGRIVRLRGARAPLGRGRGAASGALSDERGAGTVLVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADLAALGGATALSSIVAPGDPCEAASRVARANGAEVTTCSVTGEDVVVEVSVEARVLGVSRPAVSSARAGPVDDPLast
1 -76.600HGC00711 gi|162743779|dbj|BAAZ01020484.1|1.0 TMP00907;  ali  100  1VRGRIVRLRGARAPLGRGRGAASGALSDERGAGTVLVVGVIAVLLAAALGVSGLIQAQAAAGRSRAAADLAALGGATALSSIVAPGDPCEAASRVARANGAEVTTCSVTGEDVVVEVSVEARVLGVSRPAVSSARAGPVDDP 142
2 -5.690HGC01179 gi|162738527|dbj|BAAZ01025469.1|2.0 TMP01658;  ali follow..  15  14.........................LNNERGEANYFSTVVIFIAVLLLAFIIDLFSIISTKQELDHAAQLSGGVNGETDELFEFLSSQIEGAENISYSIDATYTSPRPSGMTNAIQLGTPFFI................... 119
3 -4.360PB001030 Q6D4H5_ERWCT/1-146 PB001030; Pfam-B_1030;  ali follow..  1.....................................................MTHMARKPLGKYRQREIRTVGLMIALYKRHPETDASTQYNDLFSYAIKRLERCHFEDKPACKHCPIHCYQPARREAIKAIMRSGP.... 88
4 -4.300PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  15  64IRGTFVEGTQHLK-----ERQLQGETQSTRSGRTLRTLALLIAVCLLSWLV........................................................................................... 109
5 -3.210PB037276 Q24TM0_DESHY/1-190 PB037276; Pfam-B_37276;  ali follow..  12  28..........................KGEGGSGEMVCYDIAPGIQMSFNQLTMDSTFQSIAPVKKFLQIDYCIEGCYEVEYQNGEGDLCVTDLSRQVFVSSRLPLRKYRGVTLFLEVEK....................... 126
6 -3.200HGC01024 gi|162869036|dbj|BABB01000971.1|4.0 TMP01399;  ali follow..  2..................................MRRKNITWVWLLGAAFMVGCGNIIQPDRMENILYDYHLSISMGNNLSYSDNYQKEAYKNYVFEKHHITEAE..................................... 77
7 -3.030PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  2................................SNILILIIGVLVLGLVAALTEIRHSHKRRAAEAKGESLPEEPVRVVPPGCCGMHITCEKDSLLTAVSK.......................................... 69
8 -2.920PB013946 A7ABR4_9PORP/121-442 PB013946; Pfam-B_13946;  ali follow..  10  233.....................................................................VKVLESIDEYYNEGKTQGICVFGSGYYKKADTLILSARIGDEIETVEVDLRTL-----EVVQCHGKHNQDTEY 301
9 -2.900HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali follow..  75....................................QKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTIVIRQKNTPYFL---SMDCGYQMKQRSYSRHLLDSIYIQTAEVSIYGTENLKL................... 162
10 -2.870PB042013 A7V626_BACUN/1-162 PB042013; Pfam-B_42013;  ali follow..  18  1..................................MKRNYFFTMLAAVLLAVAGANAQESAEFRPAELAGIWQLCHYVSEIPDVPGILKPSNTFKVLSDDGRIVNFTMIPGKDAIIT.......................... 82

FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 2 0 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Veeramalai M, Ye Y, Godzik A. TOPS++FATCAT: fast flexible structural alignment using constraints derived from TOPS+ Strings Model. BMC Bioinformatics. 2008 Aug 31;9(1):35