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Query: HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MSREKRKAKKEAEKRLSTRQFIGAKEITDYSLVTYGQGELVYFIVKPTNISVLSESSVGARIYALMTVLKGVAEIEMLCLNSRESFEDNKRFLKSQMEQEENPVIRRLLEQDQTHLDRIQVQMATAREFLIMLRLKDEKESDIFPYLSRIEKSLKEQSFSVKRADKEDIKRILAVYYEQNVTTEKFEDFDGERWIIPEILast
1 -79.900HGC00816 gi|163609134|dbj|BABG01026932.1|1.0 TMP01075;  ali  100  1MSREKRKAKKEAEKRLSTRQFIGAKEITDYSLVTYGQGELVYFIVKPTNISVLSESSVGARIYALMTVLKGVAEIEMLCLNSRESFEDNKRFLKSQMEQEENPVIRRLLEQDQTHLDRIQVQMATAREFLIMLRLKDEKESDIFPYLSRIEKSLKEQSFSVKRADKEDIKRILAVYYEQNVTTEKFEDFDGERWIIPEI 199
2 -3.200PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  38...................................................AEGNELINGQIEKQIKGQTQTALLQNSIATEFNQIHKWEKQYNSYLKTASGYASSNDGVRIFLTLGKLGKAIQNNPQGIVASMNMNNLYIETATELVSVFTLLNDAGSNENMLTGAERSKTLWALNDQ.................... 176
3 -3.170PB007733 A3U921_9FLAO/1-209 PB007733; Pfam-B_7733;  ali follow..  24...............................IIEGDTIPREFIDLEEVIILKFTSDLERRRYLILRRKTRKVWPYAKLASERLSELNARLASIKS--KSERRKYTKIVQKYIEEQFAAELKKLTRTEGQILVKLIHRQTGVTTFQLIKNLRSGWRAF-----------WYDTTAGLFDIELKSEYNPVNNREDFLIEDI 181
4 -2.920PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF  ali follow..  5.........KELRKKSIAEYLLYMWQIED--IIRVYGCSLTRIRKEYIDKFDYTDEQKEEEEDWFGDLVRMMNQEGCRENGHLQINKVVMQALTELLASSKFPFYSAEYYRVLPFIVELRGKTKQVADRMARKNEANLKEIAANLGHSEVETCFDVLGVMMLRLQKKEISR............................ 169
5 -2.730PB021443 Q5LG43_BACFN/1-226 PB021443; Pfam-B_21443;  ali follow..  30..................................NDMKGVSSVYISKAMMELNPNLFMKD--LYIGKVAEHLNSVQVLSTHDNKVREEMAKDIRSLVQSSKYELLMKQKSTVSGSEVYVNRKGSKVKELIMVMNGASS............................................................. 131
6 -2.730PB034883 _HOMD.0130261_ bfor_c_1_4664 Tannerella forsythia ATCC 43037 [1809083 - 1810348] ORF  ali follow..  2...........RKELHNTKVTVRLRKSA------YRNEWYLYIESYPVYTAGKSEPQRVREYLNRIVTTVVWDKTRTARTTSSYKPKRDLNGVIQCKSEVDQEACIYADEVRKLRQREYDNADLYSDADTAQAEQKERLQQNFIGYFREAMYKRHKNSSTSILVNWKRAMDFLKMYAGENLPFFKIDN-EYKRFLAP.. 189
7 -2.280PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  1MRVPRRSWPPRRFPPVLLSGAVTLKRMPQPVTALLAAMITPAVLISGAGTLIMSTSTRGRATDRVRGLTSRFKQLVSAEGQNEPLAREEKRLIIRQLP..................................................................................................... 99
8 -2.200PB019388 gi|83589066|ref|YP_429075.1| Radical SAM [Moorella thermoacetica ATCC 39073]gi|83571980|gb|ABC18532.1| Radical SAM [Moorella thermoacetica ATCC 39073]  ali follow..  11  3..............................................................DEFGYLFLDRPPYQVLA-SSAITYEEMLR-----------------LHAIEGLLKYYGNSHLADHAFAYLA--ATAFDGSYFAIYEALAAWWEARGLLRRGHSQRDLFNHLASFAIH.................... 99
9 -2.170PB030138 Q7MX14_PORGI/1-113 PB030138; Pfam-B_30138;  ali follow..  17  13..............................................................................................................................RSFDHKPIYYDQRRDELEKRIERIRREVE............................................ 41
10 -1.830PB004476 gi|139436894|ref|ZP_01771054.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]gi|133776541|gb|EBA40361.1| Hypothetical protein COLAER_00025 [Collinsella aerofaciens ATCC 25986]  ali follow..  240..TDDQIQAACNAANNFLGVNVTLKLNGEDAGKVDGSSVLQWISFADPANPTLDTSQISSWAAELANGFNTVGSTRWWTRADSIDSSSLAKQVEDAINNKQTGEIEIKYSQ........................................................................................ 361

FFAS is supported by the NIH grant R01-GM087218-01
1 4 0 1 8 1   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Li W, Wooley JC, Godzik A. Probing metagenomics by rapid cluster analysis of very large datasets. PLoS ONE. 2008;3(10):e3375. Epub 2008 Oct 10.