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Query: HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst TFVWIIVPMARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQKLADVFVLVIGFILKFFIILAGIFLLPPLVLVVFILVVVTFALLMGGAGFIYNLSPFGADLINGAPLSMAIMGCIGTILFIGIPIFSLIYAICSQLFKIRPLPTQARWILLALWLISFILCGVYIHQSGMLYDWHNYWNGVHDWNRNAVWLPLast
1 -130.000HGC00928 gi|162868028|dbj|BABB01001979.1|3.0 TMP01255;  ali  100  1TFVWIIVPMARTATEKLEMRGQSVTVENIGKTVTDGFEKVSNNVNDFISSDKPRNFFQKLADVFVLVIGFILKFFIILAGIFLLPPLVLVVFILVVVTFALLMGGAGFIYNLSPFGADLINGAPLSMAIMGCIGTILFIGIPIFSLIYAICSQLFKIRPLPTQARWILLALWLISFILCGVYIHQSGMLYDWHNYWNGVHDWNRNAVWLP 210
2 -5.800PB002104 Q72PH8_LEPIC/1-220 PB002104; Pfam-B_2104;  ali follow..  17  1.........................MHNFKEKIQ--FSKIRSRSCPFMQQNKFRKAI-----------------------------VAILMPMILVVSFGNCFGKFAIVKKVYEVNDGFNIGSGLLAKFIKTL-VMYFPFSILYFVGFFFDLILFNL------------------------------------EFWSG-----NNPV... 110
3 -5.480PB000520 Q9RVX4_DEIRA/1-194 PB000520; Pfam-B_520;  ali follow..  10  34LLAAMITPAVLISGAGTLIMSTSTRVGRATDRVRGLTSRFKQLVSAEGQNEPLAREEKRLIIRQLPRLSRRTRFLMRALQAFYTSVALLVLTSILLGLDGLFDVNTGSL-----------------PLLVALGGSVSLA----YGALLLSYEARYSAATTKEEMRFL........................................... 179
4 -4.760PB019278 gi|154508461|ref|ZP_02044103.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]gi|153798095|gb|EDN80515.1| hypothetical protein ACTODO_00960 [Actinomyces odontolyticus ATCC 17982]  ali follow..  9  125VAILVSTGIPLFAFRGLSETGTFLALAVDLPLVALGVIMLLTRSRLFTNVKHLVDLEFTPDPIVTAWAARLRLEHEDRRMRRLAIAVGLWICAALPLAVVQALPPIGGADNGTLNGGDLSELALALSVVLVALGLWIFLPANWAVQTQQTL----EENYRDPVIGIVASVYWPC---VIVAYFVWGAVFNQWDKSW---------VLF.. 343
5 -3.800PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;  ali follow..  9  148..VIAYYPAIAGTEN----FTDGIPFDFTQTNNPQQKEILYNTNTSYTIPSSGGSDKVTIPLKFQHAYSWISIKVTK-KGSHKLSGVSIDNLSGGWIKINPATGMAMQGAIQGPIGEVRTAEVLDPSGDTATPIIYDFLVPAFMDRNVKDDDLVFTLIIDGKKEIFSLGREHLNNDGDTYGF--KQGYANTYNVEFNNLLNWTSTRI... 358
6 -3.550PB050904 Q64SA2_BACFR/1-230 PB050904; Pfam-B_50904;  ali follow..  10  55........QTQTALLQNSIATEFNQIHKWEKQYNSYLKTASGYASSLKACTHLYNDGVRIFLTLGKLGKAIQNNPQGIVASMNMNNLYIETATELVSVFTL-------LNDAVAKGSNENMLTGAER-----SKTLWALNDQLSDFSRKLHLLYLSIRYYTFNDVWNNVT----------MLDRDNGEAAR-----MALSHWHRAA.... 227
7 -3.460PB162020 _JGI.0344610_ 2004040329 [Human Gut Community Subject 8]  ali follow..  6  1....LTETQFKVQAEQQRLEAVTAQVADVEQSLEKTKAAAEKQKKKLEALQKETKAARATALTVQDI............................................................................................................................................... 63
8 -2.950PB202086 Q8G498_BIFLO/2-200 PB202086; Pfam-B_202086;  ali follow..  10  146........WYETHEKSLSKAVRAVVESKAAKRLDDAKTNLTAKLDEASKLLADSDG.......................................................................................................................................................... 193
9 -2.820PB046158 _JGI.0336690_ 2004028347 [Human Gut Community Subject 8]  ali follow..  13  71.......PHGKQTIKQLNAQGVQLSNIKITDENIKSFDRVARKIDYSLKKEVGADPPKYLVFFKAKDVDVMTAAFREYAG.................................................................................................................................. 145
10 -2.740HGC01215 gi|162843249|dbj|BABA01001460.1|3.0 TMP01713;  ali follow..  13  1.......................................................................................................................................................................LVGVFCVGFSVDVFIVHIREICF.................... 24
FFAS is supported by the NIH grant R01-GM087218-01
1 4 8 3 1 9   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Ye Y, Godzik A. Multiple flexible structure alignment using partial order graphs. Bioinformatics. 2005 Mar 3;