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Query: HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
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# Score Template Links and tools%idFirst MRKLVKLILLCLIAYPIISIVSSCSEEEDCSMNARPMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTIVIRQKNTPYFLSMDCGYQMKQSITGRSYSRHLLDSIYIQTAEVSIYGTENLKLFYRNLast
1 -82.400HGC00947 gi|162844524|dbj|BABA01000185.1|4.0 TMP01280;  ali  100  1MRKLVKLILLCLIAYPIISIVSSCSEEEDCSMNARPMMQCYLYKIDGETERVVNDTLDSLTITAFGTDSIILNNQKRVHGLSLPLRYTADSTVLVFHYSKDVKIKKDTIVIRQKNTPYFLSMDCGYQMKQSITGRSYSRHLLDSIYIQTAEVSIYGTENLKLFYRN 166
2 -13.900PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  10  1MKIER---LFIYCLLAGTSLLASCNSEDMTDNPVETLYPLTFTAMQGEVVATPQTRVSDYDDTDGKHKSK-----DGGEVIGVKIGTDGAVGSYTLDSDGKPTTSTSNIPAYWQSTASQTVYG-PNTADISLTGQDNTGNKFPYVLKGVSSKQYSYKENVQLNLEH 164
3 -12.800PB048631 gi|160885545|ref|ZP_02066548.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]gi|156109167|gb|EDO10912.1| hypothetical protein BACOVA_03545 [Bacteroides ovatus ATCC 8483]  ali follow..  16  1MK--IKFLSFIASFFMVSFVITSCLDDDN-NIEYSPDATIHAFALDTAGLGSYKFTIDQLSREIYNEDSLPVHADTIIDKILIKTLTTASGVVTMKDKSGNDSNINDSIDLREPLTIKVWSTE........................................... 122
4 -12.100PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  13  1MKTLTFKYLKLFLLAVAMINLTSCEIEIDDFYDDDNIGGSYYNKSLDLCSRPWADTFYDADGNYCYQELNFYLDRHGEDYIRV--RYSESVYSFTWNWEDRSQ---YSLRMVYGPG---------------------DVSYLDDVWIRGNVLSGYLDGHDNYVDFT 145
5 -11.000HGC01056 gi|162659434|dbj|BAAX01000171.1|2.0 TMP01455;  ali follow..  11  1MKK----LLLAMIAVAALISFAACDHNETYADDRELDSINAFLRNENIKVINEAEFEKRFEARKAGDKAVKLTDTDPNNNEYV---LFESNGIYMQVINDGCKGKTQNVLCRFTEY.................................................. 116
6 -10.200PB029229 gi|150007903|ref|YP_001302646.1| hypothetical protein BDI_1263 [Parabacteroides distasonis ATCC 8503]gi|149936327|gb|ABR43024.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503]  ali follow..  12  1MKT----GIRVTVYALLAMILFSCEHKELC-FHHPHMVTLRVDFDWKNAPQADPEGMCVY-FYPEEGESPIRFDFAGKDGGSVEIKEGR----YRILC------NNDTESLLFRGMEGFDTHEG.......................................... 109
7 -8.880PB004588 Q64QH1_BACFR/1-389 PB004588; Pfam-B_4588;  ali follow..  6  19TQKKHNLSGTIILVSCFLLLAGACDNSDR-TETQANGVLLNFNASTIDATTTETRSFVPIEGFAKNEYIFGMSVTKDNASRGYPAIAGTENFTDGIPFDFTQTNNPQQKEILYNTNTSYTKVTIPLKFQHAYSWISIKSVDKGSHKLSGVSIDNLSGGWIK..... 241
8 -8.460PB011023 A7V2G7_BACUN/1-167 PB011023; Pfam-B_11023;  ali follow..  7  9KRTSIFKALALCLFAAVSFTFVSCDDD----MDIQQSYPFTVETMPVPNKVTKGQTVEI---------ELKKTGDFANTLYTIRYFQFEGEGTLKMDNGITFLPNDRYLLENEKFRLYYTAQGDE-------------AHNFIVVVEDNFGNSYELEFDFNN.... 146
9 -6.900HGC00683 gi|163310582|dbj|BABD01000118.1|4.0 TMP00861;  ali follow..  7  1MKTL--KITFVMLMTALFLVLPSCSKDDVNVTLTPSEEVVNAFQQKYPDVKNVK---------EILVGAYEAEFIYSGTYSENGQHIVLDKVEAQAYITQGGKWVRSEFDVTKDYQDSSSLV--GKKVDDVKLFDWSDRNDYFYVEFDEPDSELLINFDGTLY... 163
10 -6.660PB083081 gi|160890648|ref|ZP_02071651.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]gi|156859647|gb|EDO53078.1| hypothetical protein BACUNI_03093 [Bacteroides uniformis ATCC 8492]  ali follow..  6  1MKKTI--FYSLFSALFMLTSCSMFEIDN---EEPSETIWGEVVDEATGKR--------------------------------VLTDQGSEGIRVRLTELSWGDNVQHNPDFYCMMDGTFQNTKIG---EYNVRNTDGTLLHDGSVNT---EISGTTKVKFEV.... 133
FFAS is supported by the NIH grant R01-GM087218-01
1 4 6 8 5 0   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Plewczynski D, Tkacz A, Godzik A., Rychlewski L. A support vector machine approach to the identification of phosphorylation sites. Cell Mol Biol Lett. 2005;10(1):73-89.