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Query: HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;, from HGM_OVER

Results of FFAS03 search in HGM_OVER
Master-slave alignment(slide right to see more) does not show gaps in the query sequence, use ali links to display alignment between query and templates.
    .   10    .   20    .   30    .   40    .   50    .   60    .   70    .   80    .   90    .  100    .  110    .  120    .  130    .
# Score Template Links and tools%idFirst MKDRLSQWKEFYMIFVPMLHYLQNKNSFSGNEDGMRYLITPGKRSVPDPDGGEEAKKEEAILTVDLWPEPWTLDKTDPALRRREIFPMTEEGRTAVAQYLNDAYNAEPERWSAHPSILDCEPWTPPAPEPDAETQHLast
1 -91.000HGC00965 gi|163282470|dbj|BABD01028218.1|2.0 TMP01310;  ali  100  1MKDRLSQWKEFYMIFVPMLHYLQNKNSFSGNEDGMRYLITPGKRSVPDPDGGEEAKKEEAILTVDLWPEPWTLDKTDPALRRREIFPMTEEGRTAVAQYLNDAYNAEPERWSAHPSILDCEPWTPPAPEPDAETQH 136
2 -6.070PB014033 A5ZI39_9BACE/1-158 PB014033; Pfam-B_14033;  ali follow..  91.........................................................................EKSGAEKKTSTQVLVQAADLRDAVKKLDEGMKGTMADYQSETPLMDVYPYSAGPNDKPEFDP. 156
3 -4.550PB006791 A6TXD6_9CLOT/1-181 PB006791; Pfam-B_6791;  ali follow..  77VHKRLDIINNRMSFCIQKVGMVRY-NAFADMGSDLSYSYA--------------DENNNGMIITGIYGRSETVTYAKPVKDGKSNYSLSVEELQALQRAKENTIDTLELQGFRSKKEL.................. 181
4 -3.360PB032818 Q5LA03_BACFN/1-211 PB032818; Pfam-B_32818;  ali follow..  98IKKNCRTQNDVQAYLFMYQGFSSDLMMLMGNLMQWKFRMPAIFKKA----RSMTEKTVHDVCTKTVWKADDVHKTAAAVRQYKERLGFSEQ-------WMSE-----------VYNIVLLAKKEPKHKDEEAKA.. 211
5 -3.170PB019279 Q5LE73_BACFN/1-147 PB019279; Pfam-B_19279;  ali follow..  42.......................................................YNKSLDLCSRPWADTFY-DADGNYCYQELNFYLDRHGEDYIRNWEDRSQYSLRMVYGPGDVSYLDDVWI............ 126
6 -3.040PB027498 Q7MTK6_PORGI/1-146 PB027498; Pfam-B_27498;  ali follow..  12  59........................................................EKDSLLTAVSKSIVYYDDEELDRYAGVLPEEYNTEAVEEFEEILSTLQEEEVPSWIRSLQMRQIQ--MPISIKEQA.... 132
7 -3.010PB025553 _HOMD.0078651_ pint_c_1_4510 Prevotella intermedia 17 [1755134 - 1755736] ORF  ali follow..  16  6....................................................ELRKKSIAEYLLYMWQRVYGCSLTRIRKEYIDKFDYTDEQKEEEEDWFGDLVRMMNQEGCRENGHLQ................. 77
8 -3.000PB064361 Q64PJ4_BACFR/1-580 PB064361; Pfam-B_64361;  ali follow..  33............................TLSEGMYPLTFTAMQGEVVATPQTRVSDYDDTD-HKSKWDGGEVIGVKIGTDGAVGSYTLDSDGKPTTS-------TSNIPAYWQSTASQTVYGWYPNTADISLTGQD 134
9 -2.960HGC00579 gi|163284429|dbj|BABD01026259.1|2.0 TMP00679;  ali follow..  12  140.................................KVTYGMDFGRKRKTAAKRIQNEDTDTGILKG........................................................................ 170
10 -2.950HGC00878 gi|162869432|dbj|BABB01000575.1|7.0 TMP01167;  ali follow..  13  15........................................................................................NKTDLDKIEDFLDDTFSEFTNRYGDSVDAEFSSRWVYPEEEIKK.... 58

FFAS is supported by the NIH grant R01-GM087218-01
1 4 7 6 1 7   jobs submitted since Jan 1, 2011
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Selected papers from Godzik Lab
Ying Zhang, Ines Thiele, Dana Weekes, Zhanwen Li, Lukasz Jaroszewski, Krzysztof Ginalski, Ashley Deacon, John Wooley, Scott Lesley, Ian Wilson, Bernhard Palsson, Andrei Osterman, Adam Godzik. Three-Dimensional Structural View of the Central Metabolic Network of Thermotoga maritima. Science. 2009 Sep 18;325(5947):1544-9.

Mayya Sedova, Mallika Iyer, Zhanwen Li, Lukasz Jaroszewski, Kai W Post, Thomas Hrabe, Eduard Porta-Pardo, Adam Godzik Cancer3D 2.0:: interactive analysis of 3D patterns of cancer mutations in cancer subsets. Nucleic Acids Research, gky1098 2018; Published on November 8 2018.

Jaroszewski L, Rychlewski L, Zhang B, Godzik A. Fold prediction by a hierarchy of sequence, threading, and modeling methods. Protein Sci. 1998 Jun;7(6):1431-40.